CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gfo_R012754
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R012754
T135849_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VEZF1
M01172_2.00
Homo sapiens
CCCCCCMYNN
NNRKGGGGGG
PBM
Lambert et al.(2019)
pTH11265
0.825
0.989
VEZF1
M08893_2.00
Homo sapiens
YYYYBCYYYYTCCYYYYYYYYH
DRRRRRRRRGGARRRRGVRRRR
Misc
Kulakovskiy et al.(2013)
VEZF1_HUMAN.H11MO.0.C
0.825
0.989
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R012754
C2H2 ZF
164
186
HACEMCGKAFRDVYHLNRHKLSH
Gfo_R012754
C2H2 ZF
192
214
FECPICNQRFKRKDRMTYHVRSH
Gfo_R012754
C2H2 ZF
222
245
YTCGVCGKGFSRPDHLSCHVKHVH
Gfo_R012754
C2H2 ZF
251
273
FKCQTCTAAFATKDRLRTHMVRH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy