Myotis_brandtii_GFI1B_10010118 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_GFI1B_10010118 T136027_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.799 0.947
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.799 0.947
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.799 0.947
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.797 0.939
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.797 0.939
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.797 0.939
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.797 0.939
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.797 0.939
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.797 0.939
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.797 0.939
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.775 0.826
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.764 0.856
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.764 0.856
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.764 0.856
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.764 0.856
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.764 0.856
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.764 0.856
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.764 0.856
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.764 0.856
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.762 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 252 269
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 275 297
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 303 325
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 331 353
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 359 381
Myotis_brandtii_GFI1B_10010118 C2H2 ZF 387 410

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.814
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.799
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.799
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.799
GFI1B Equus caballus ENSECAG00000008127 I 0.799
GFI1B Canis familiaris ENSCAFG00000019877 I 0.799
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.799
Gfi1b Mus musculus ENSMUSG00000026815 D 0.799
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.799
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.799
GFI1B Felis catus ENSFCAG00000027147 I 0.797
GFI1B Sus scrofa ENSSSCG00000005737 I 0.797
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.797
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.797
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.797
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.797
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.797
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.797
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.797
GFI1B Homo sapiens ENSG00000165702 D 0.797
GFI1B Bos taurus ENSBTAG00000012772 I 0.797
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.797
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.796
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.796
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.796
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.793
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.793
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.792
Tal_R001363 Tyto alba Tal_R001363 I 0.792
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.792
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.792
Aan_R008865 Calypte anna Aan_R008865 I 0.792
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.792
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.792
GFI1B Gallus gallus ENSGALG00000003478 I 0.792
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.791
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.790
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.789
GFI1B Procavia capensis ENSPCAG00000012329 I 0.789
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.789
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.785
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.780
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.777
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.777
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.775
GF15430 Drosophila ananassae FBgn0092455 I 0.775
MDOA011065 Musca domestica MDOA011065 I 0.775
GG10437 Drosophila erecta FBgn0102746 I 0.775
GE14143 Drosophila yakuba FBgn0231766 I 0.775
GM16223 Drosophila sechellia FBgn0171139 I 0.775
GK24242 Drosophila willistoni FBgn0226203 I 0.775
GH13715 Drosophila grimshawi FBgn0121191 I 0.775
GI23984 Drosophila mojavensis FBgn0146708 I 0.775
GJ21268 Drosophila virilis FBgn0208401 I 0.775
GL26188 Drosophila persimilis FBgn0163770 I 0.775
sens-2 Drosophila melanogaster FBgn0051632 D 0.775
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.774
gfi1b Danio rerio ENSDARG00000079947 I 0.772
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.772
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.770
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.769
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.769
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.767
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.767
LotgiG83709 Lottia gigantea LotgiG83709 I 0.766
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.766
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.766
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.766
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.765
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.765
gfi1ab Danio rerio ENSDARG00000044457 I 0.765
Tal_R006464 Tyto alba Tal_R006464 I 0.765
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.765
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.765
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.765
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.765
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.765
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.765
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.765
Aan_R000889 Calypte anna Aan_R000889 I 0.765
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.765
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.765
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.765
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.765
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.764
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.764
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.764
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.764
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.764
GFI1 Homo sapiens ENSG00000162676 D 0.764
GFI1 Felis catus ENSFCAG00000005914 I 0.764
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.764
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.764
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.764
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.764
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.764
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.764
GFI1 Equus caballus ENSECAG00000006647 I 0.764
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.764
GFI1 Bos taurus ENSBTAG00000016723 I 0.764
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.764
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.764
GFI1 Canis familiaris ENSCAFG00000020155 I 0.764
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.764
gfi1aa Danio rerio ENSDARG00000020746 I 0.764
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.764
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.764
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.764
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.764
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.764
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.764
GFI1 Sus scrofa ENSSSCG00000006902 I 0.764
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.764
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.764
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.764
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.764
Gfi1 Mus musculus ENSMUSG00000029275 D 0.764
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.764
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.764
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.764
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.762
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.762
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.762
gfi1b Oryzias latipes ENSORLG00000014390 I 0.762
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.760
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.756