CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Myotis_brandtii_SNAI1_10026057
(
Myotis brandtii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Myotis_brandtii_SNAI1_10026057
T136117_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN
NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.817
0.912
Snai1
M09002_2.00
Mus musculus
VCACCTGB
VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.817
0.912
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN
NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.817
0.901
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN
NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.817
0.901
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.817
0.901
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.817
0.901
SNAI1
M10201_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.817
0.901
SNAI1
M10202_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.817
0.901
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN
NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.817
0.901
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.817
0.901
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Myotis_brandtii_SNAI1_10026057
C2H2 ZF
153
175
FNCKYCNKEYVRLGALKMHIRSH
Myotis_brandtii_SNAI1_10026057
C2H2 ZF
179
201
CVCGTCGKAFSRPWLLQGHVRTH
Myotis_brandtii_SNAI1_10026057
C2H2 ZF
207
229
FSCSHCNHAFANRSNLRAHLQTH
Myotis_brandtii_SNAI1_10026057
C2H2 ZF
235
256
YQCKTCSRTFSRMSLLHKHQES
Links
Other
C2H2 ZF
family TFs
Other
Myotis brandtii
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy