Myotis_brandtii_SNAI1_10026379 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_SNAI1_10026379 T136118_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.818 0.923
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.818 0.923
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.818 0.912
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.818 0.912
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.818 0.912
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.818 0.912
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.818 0.912
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.818 0.912
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.818 0.912
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.818 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_SNAI1_10026379 C2H2 ZF 154 176
Myotis_brandtii_SNAI1_10026379 C2H2 ZF 180 202
Myotis_brandtii_SNAI1_10026379 C2H2 ZF 208 230
Myotis_brandtii_SNAI1_10026379 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

Invalid Input OrderBy

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action