CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr11440
(
Ophisaurus gracilis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Ogr11440
T136664_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zbtb12
M00146_2.00
Mus musculus
NGTTCTARRN
NYYTAGAACN
PBM
Badis et al.(2009)
Zbtb12_2932
0.824
0.971
ZBTB12
M04633_2.00
Homo sapiens
RGCTGRRCCGCGYN
NRCGCGGYYCAGCY
SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_1
0.824
0.971
ZBTB12
M04634_2.00
Homo sapiens
AVGACGGCAGGCCB
VGGCCTGCCGTCBT
SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_2
0.824
0.971
ZBTB12
M08389_2.00
Homo sapiens
CTAGAACMB
VKGTTCTAG
ChIP-seq
Schmitges et al.(2016)
Q9Y330_1-3.RCADE
0.824
0.971
ZBTB12
M08269_2.00
Homo sapiens
NNRDTCTAGAACVYNNN
NNNRBGTTCTAGAHYNN
ChIP-seq
Najafabadi et al.(2015b)
ZBTB12
0.824
0.971
ZBTB12
M04635_2.00
Homo sapiens
AGCTGRRCCGCGYN
NRCGCGGYYCAGCT
SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_1
0.824
0.971
ZBTB12
M04636_2.00
Homo sapiens
RMGACGDCAGGCCW
WGGCCTGHCGTCKY
SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_2
0.824
0.971
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr11440
C2H2 ZF
257
279
FMCPRCGKQFNHSSNLNRHMNVH
Ogr11440
C2H2 ZF
285
307
HSCTICGKCFTQKSTLHDHMNLH
Ogr11440
C2H2 ZF
313
336
YRCSYCDVRFAHKPAIRRHLKEQH
Links
Other
C2H2 ZF
family TFs
Other
Ophisaurus gracilis
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy