CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr12333
(
Ophisaurus gracilis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Ogr12333
T136671_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF384
M04451_2.00
Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA
TTTTBNNNNNNNNNNNNVAAAA
SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX
0.771
0.913
ZNF384
M08306_2.00
Homo sapiens
CTTTTTTTT
AAAAAAAAG
ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE
0.771
0.913
ZNF384
M08090_2.00
Homo sapiens
WTTTTTTTNHNN
NNDNAAAAAAAW
ChIP-seq
Mathelier et al.(2014)
MA1125.1
0.771
0.913
ZNF384
M08888_2.00
Homo sapiens
BVNNBTTTTTSC
GSAAAAAVNNBV
Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C
0.771
0.913
ZNF384
M10209_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CIZ_01
0.771
0.913
ZNF384
M04452_2.00
Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV
BTTTYHNNNNNNNNNNDRAAAM
SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX
0.771
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr12333
C2H2 ZF
41
63
LRCRMCSLTFYSKSEMQIHSKSH
Ogr12333
C2H2 ZF
69
91
HKCPHCSKSFANSSYLAQHIRIH
Ogr12333
C2H2 ZF
97
119
YTCSYCQKAFRQLSHLQQHTRIH
Ogr12333
C2H2 ZF
130
152
HKCPHCSKSFANTSYLAQHLRIH
Ogr12333
C2H2 ZF
158
180
YTCRYCQKAFRQLSHLQQHTRIH
Ogr12333
C2H2 ZF
186
210
YKCAHPGCEKAFTQLSNLQSHRRQH
Ogr12333
C2H2 ZF
216
238
FKCHNCHRAYTDATSLEVHLATH
Ogr12333
C2H2 ZF
246
268
YNCSMCNRAYTSETYLMKHMRKH
Links
Other
C2H2 ZF
family TFs
Other
Ophisaurus gracilis
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy