Ogr16980 (Ophisaurus gracilis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ogr16980 T136751_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Sp7
M09009_2.00
Mus musculus
VHAVCCTRTAATTW

WAATTAYAGGBTDB
Misc
Kulakovskiy et al.(2013)
SP7_MOUSE.H11MO.0.A
0.821 0.971
SP7
M10258_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSX_Q3
0.821 0.971
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH

DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.771 0.884
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH

DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.771 0.884
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH

DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.771 0.884
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH

DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.771 0.884
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH

DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.771 0.884
Sp1
M03682_2.00
Drosophila melanogaster
HNGCCACGCCCARK

MYTGGGCGTGGCND
SELEX
Nitta et al.(2015)
Sp1_1
0.758 0.870
Sp1
M06117_2.00
Drosophila melanogaster
DHYMCGCCCMY

RKGGGCGKRDH
B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378
0.758 0.870
Sp1
M06118_2.00
Drosophila melanogaster
NKHHMCGCCCMYNN

NNRKGGGCGKDDMN
B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378
0.758 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr16980 C2H2 ZF 292 316
Ogr16980 C2H2 ZF 322 346
Ogr16980 C2H2 ZF 352 374

Links

Other C2H2 ZF family TFs
Other Ophisaurus gracilis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
XP_002932233 Xenopus tropicalis XP_002932233 N 0.000
ENSSTOG00000023379 Ictidomys tridecemlineatus ENSSTOG00000023379 N 0.000
ZBED4 Sorex araneus ENSSARG00000001048 N 0.000
Zbed4 Rattus norvegicus ENSRNOG00000004588 N 0.000
ZBED4 Pteropus vampyrus ENSPVAG00000005134 N 0.000
ZBED4 Pan troglodytes ENSPTRG00000014522 N 0.000
ENSPSIG00000007193 Pelodiscus sinensis ENSPSIG00000007193 N 0.000
ENSPPYG00000011967 Pongo abelii ENSPPYG00000011967 N 0.000
ENSPFOG00000020326 Poecilia formosa ENSPFOG00000020326 N 0.000
ENSPANG00000010852 Papio anubis ENSPANG00000010852 N 0.000
zbed4 Tetraodon nigroviridis ENSTNIG00000006775 N 0.000
ZBED4 Tursiops truncatus ENSTTRG00000009815 N 0.000
ENSXMAG00000019580 Xiphophorus maculatus ENSXMAG00000019580 N 0.000
zbed4 Xenopus tropicalis XB-GENE-6076969 N 0.000
Tal_R001537 Tyto alba Tal_R001537 N 0.000
Pvit_16079 Pogona vitticeps Pvit_16079 N 0.000
Myotis_brandtii_ZBED4_10004868 Myotis brandtii Myotis_brandtii_ZBED4_10004868 N 0.000
Gfo_R008679 Geospiza fortis Gfo_R008679 N 0.000
ENSP00000216268 Macaca fascicularis ENSP00000216268 N 0.000
Brh_R004716 Buceros rhinoceros Brh_R004716 N 0.000
Afo_R004342 Aptenodytes forsteri Afo_R004342 N 0.000
Aan_R000409 Calypte anna Aan_R000409 N 0.000
ENSONIG00000009795 Oreochromis niloticus ENSONIG00000009795 N 0.000
ZBED4 Otolemur garnettii ENSOGAG00000013251 N 0.000
zbed4 Gasterosteus aculeatus ENSGACG00000019008 N 0.000
ZBED4 Homo sapiens ENSG00000100426 N 0.000
ENSFALG00000015280 Ficedula albicollis ENSFALG00000015280 N 0.000
ZBED4 Dasypus novemcinctus ENSDNOG00000018932 N 0.000
zbed4 Danio rerio ENSDARG00000024306 N 0.000
ENSCSAG00000019288 Chlorocebus sabaeus ENSCSAG00000019288 N 0.000
ENSCPOG00000007711 Cavia porcellus ENSCPOG00000007711 N 0.000
ZBED4 Canis familiaris ENSCAFG00000000714 N 0.000
ENSAMXG00000025839 Astyanax mexicanus ENSAMXG00000025839 N 0.000
ENSGALG00000008547 Gallus gallus ENSGALG00000008547 N 0.000
ZBED4 Gorilla gorilla ENSGGOG00000009913 N 0.000
ENSLACG00000007168 Latimeria chalumnae ENSLACG00000007168 N 0.000
ENSOCUG00000029472 Oryctolagus cuniculus ENSOCUG00000029472 N 0.000
ENSNLEG00000018235 Nomascus leucogenys ENSNLEG00000018235 N 0.000
Zbed4 Mus musculus ENSMUSG00000034333 N 0.000
ENSMPUG00000018768 Mustela putorius furo ENSMPUG00000018768 N 0.000
ZBED4 Monodelphis domestica ENSMODG00000025433 N 0.000
ZBED4 Macaca mulatta ENSMMUG00000018833 N 0.000
ENSMEUG00000014660 Macropus eugenii ENSMEUG00000014660 N 0.000
ENSLOCG00000017908 Lepisosteus oculatus ENSLOCG00000017908 N 0.000
ZBED4 Loxodonta africana ENSLAFG00000017972 N 0.000
ZBED4 Anolis carolinensis ENSACAG00000009133 N 0.000