Pvit_03702 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_03702 T136993_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PATZ1
M08287_2.00
Homo sapiens
CCCCDCCC

GGGHGGGG
ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME
0.825 0.993
PATZ1
M08864_2.00
Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY

RKGGVRGRGRMKGVRVNDGVRN
Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C
0.825 0.993
PATZ1
M10137_2.00
Homo sapiens
NDDCCCCCCCCSH

DSGGGGGGGGHHN
Transfac
Matys et al.(2006)
V$MAZR_01
0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_03702 C2H2 ZF 145 167
Pvit_03702 C2H2 ZF 209 230
Pvit_03702 C2H2 ZF 236 258
Pvit_03702 C2H2 ZF 266 289
Pvit_03702 C2H2 ZF 295 317
Pvit_03702 C2H2 ZF 349 371

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

Invalid Input OrderBy

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action