CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_09540
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_09540
T137232_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFX
M08850_2.00
Homo sapiens
YBVGGCCTVS
SBAGGCCBVR
Misc
Kulakovskiy et al.(2013)
ZFX_HUMAN.H11MO.0.A
0.787
0.953
ZFX
M10098_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZFX_01
0.787
0.953
Zfx
M08100_2.00
Mus musculus
BBVRSCBVGGCCTV
BAGGCCBVGSYBVV
ChIP-seq
Mathelier et al.(2014)
MA0146.2
0.784
0.950
Zfx
M09017_2.00
Mus musculus
VVSVSBNBBAGGCCBVGSH
DSCBVGGCCTVVNVSBSBB
Misc
Kulakovskiy et al.(2013)
ZFX_MOUSE.H11MO.0.B
0.784
0.950
Zfx
M09517_2.00
Mus musculus
BNAGGCCT
AGGCCTNV
Misc
Heinz et al.(2010)
mES-Zfx_GSE11431
0.784
0.950
Zfx
M00788_2.00
Mus musculus
NRGGCCNNN
NNNGGCCYN
PBM
Weirauch et al.(2013)
pTH2933
0.783
0.946
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_09540
C2H2 ZF
414
436
YPCMICGKKFKSRGFLKRHMKNH
Pvit_09540
C2H2 ZF
446
468
YRCTDCDYTTNKKLSLHNHLESH
Pvit_09540
C2H2 ZF
478
500
IECDECGKSFSHAGALFTHKMVH
Pvit_09540
C2H2 ZF
509
532
HKCKFCEYETAEQGLLNRHLLAVH
Pvit_09540
C2H2 ZF
538
560
HICVECGKGFRHPSELKKHMRIH
Pvit_09540
C2H2 ZF
566
589
YQCQYCEYRSADSSNLKTHVKTRH
Pvit_09540
C2H2 ZF
595
617
FKCDICFQIFSDTKELQQHILMH
Pvit_09540
C2H2 ZF
623
646
HQCLHCDHKSSNSSDLKRHIISVH
Pvit_09540
C2H2 ZF
652
674
HKCDMCDKGFHRPSELKKHVAVH
Pvit_09540
C2H2 ZF
680
703
HQCRHCDFKIADPFVLSRHILSVH
Pvit_09540
C2H2 ZF
709
731
FRCKRCKKGFKLQIELKKHMKTH
Pvit_09540
C2H2 ZF
737
760
YQCEYCEYSTTDASGFKRHVISIH
Pvit_09540
C2H2 ZF
766
789
HRCEFCKKGFRRPSEKNQHIMRHH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy