Pvit_09540 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_09540 T137232_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZFX
M08850_2.00
Homo sapiens
YBVGGCCTVS

SBAGGCCBVR
Misc
Kulakovskiy et al.(2013)
ZFX_HUMAN.H11MO.0.A
0.787 0.953
ZFX
M10098_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZFX_01
0.787 0.953
Zfx
M08100_2.00
Mus musculus
BBVRSCBVGGCCTV

BAGGCCBVGSYBVV
ChIP-seq
Mathelier et al.(2014)
MA0146.2
0.784 0.950
Zfx
M09017_2.00
Mus musculus
VVSVSBNBBAGGCCBVGSH

DSCBVGGCCTVVNVSBSBB
Misc
Kulakovskiy et al.(2013)
ZFX_MOUSE.H11MO.0.B
0.784 0.950
Zfx
M09517_2.00
Mus musculus
BNAGGCCT

AGGCCTNV
Misc
Heinz et al.(2010)
mES-Zfx_GSE11431
0.784 0.950
Zfx
M00788_2.00
Mus musculus
NRGGCCNNN

NNNGGCCYN
PBM
Weirauch et al.(2013)
pTH2933
0.783 0.946
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_09540 C2H2 ZF 414 436
Pvit_09540 C2H2 ZF 446 468
Pvit_09540 C2H2 ZF 478 500
Pvit_09540 C2H2 ZF 509 532
Pvit_09540 C2H2 ZF 538 560
Pvit_09540 C2H2 ZF 566 589
Pvit_09540 C2H2 ZF 595 617
Pvit_09540 C2H2 ZF 623 646
Pvit_09540 C2H2 ZF 652 674
Pvit_09540 C2H2 ZF 680 703
Pvit_09540 C2H2 ZF 709 731
Pvit_09540 C2H2 ZF 737 760
Pvit_09540 C2H2 ZF 766 789

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

Invalid Input OrderBy

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action