CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_09756
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_09756
T137239_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.817
0.949
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.817
0.949
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.817
0.949
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.817
0.949
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_09756
C2H2 ZF
583
605
WKCSMCPQAFISPSKLHVHFMGH
Pvit_09756
C2H2 ZF
611
633
HKCDFCSKAFSDPSNLRTHLKIH
Pvit_09756
C2H2 ZF
639
661
YRCALCEKSFTQKAHLESHMVIH
Pvit_09756
C2H2 ZF
667
689
LKCDYCDKLFMRRQDLKQHVLTH
Pvit_09756
C2H2 ZF
695
717
IKCPQCEKLFLRTNHLKKHLNSH
Pvit_09756
C2H2 ZF
723
744
YVCEKCSKAYLTKYHLTRHLKI
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy