CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_11906
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_11906
T137307_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZBTB48
M08391_2.00
Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD
ChIP-seq
Schmitges et al.(2016)
P10074.MEME
0.801
0.939
ZBTB48
M08956_2.00
Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV
Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C
0.801
0.939
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_11906
C2H2 ZF
210
233
VECPTCHKSFLSKYYLKVHNRQVH
Pvit_11906
C2H2 ZF
243
264
FECSKCGKCYFRKENLLEHEAR
Pvit_11906
C2H2 ZF
274
296
FTCSICQEAFKRRMELRLHMVTH
Pvit_11906
C2H2 ZF
302
325
YKCSSCVQQFMQKKDLQSHLIKLH
Pvit_11906
C2H2 ZF
360
383
FVCEECGHRASSRNGLQMHIKAKH
Pvit_11906
C2H2 ZF
389
411
YVCEFCQHAFTQKANLNMHLRTH
Pvit_11906
C2H2 ZF
417
439
FQCHLCGKTFRTQASLDKHNRTH
Pvit_11906
C2H2 ZF
445
468
FSCEFCEQRFTERGPLLRHIASRH
Pvit_11906
C2H2 ZF
474
496
HFCQICGKTFKAVEQLRVHVRRH
Pvit_11906
C2H2 ZF
502
524
FECTECGYKFTRQAHLRRHMEIH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy