CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_12574
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_12574
T137325_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF384
M04451_2.00
Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA
TTTTBNNNNNNNNNNNNVAAAA
SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX
0.771
0.918
ZNF384
M08306_2.00
Homo sapiens
CTTTTTTTT
AAAAAAAAG
ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE
0.771
0.918
ZNF384
M08090_2.00
Homo sapiens
WTTTTTTTNHNN
NNDNAAAAAAAW
ChIP-seq
Mathelier et al.(2014)
MA1125.1
0.771
0.918
ZNF384
M08888_2.00
Homo sapiens
BVNNBTTTTTSC
GSAAAAAVNNBV
Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C
0.771
0.918
ZNF384
M10209_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CIZ_01
0.771
0.918
ZNF384
M04452_2.00
Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV
BTTTYHNNNNNNNNNNDRAAAM
SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX
0.771
0.918
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_12574
C2H2 ZF
240
262
YRCRMCSLTFYSKSEMQIHSKSH
Pvit_12574
C2H2 ZF
268
290
HKCPHCSKSFANSSYLAQHIRIH
Pvit_12574
C2H2 ZF
296
318
YTCSYCQKAFRQLSHLQQHTRIH
Pvit_12574
C2H2 ZF
329
351
HKCPHCSKSFANTSYLAQHLRIH
Pvit_12574
C2H2 ZF
357
379
YTCRYCQKAFRQLSHLQQHTRIH
Pvit_12574
C2H2 ZF
385
409
YKCAHPGCEKAFTQLSNLQSHRRQH
Pvit_12574
C2H2 ZF
415
437
FKCHNCHRAYTDATSLEVHLATH
Pvit_12574
C2H2 ZF
445
467
YNCSMCNRAYTSETYLMKHMRKH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy