Pvit_12574 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_12574 T137325_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF384
M04451_2.00
Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA

TTTTBNNNNNNNNNNNNVAAAA
SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX
0.771 0.918
ZNF384
M08306_2.00
Homo sapiens
CTTTTTTTT

AAAAAAAAG
ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE
0.771 0.918
ZNF384
M08090_2.00
Homo sapiens
WTTTTTTTNHNN

NNDNAAAAAAAW
ChIP-seq
Mathelier et al.(2014)
MA1125.1
0.771 0.918
ZNF384
M08888_2.00
Homo sapiens
BVNNBTTTTTSC

GSAAAAAVNNBV
Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C
0.771 0.918
ZNF384
M10209_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CIZ_01
0.771 0.918
ZNF384
M04452_2.00
Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV

BTTTYHNNNNNNNNNNDRAAAM
SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX
0.771 0.918
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_12574 C2H2 ZF 240 262
Pvit_12574 C2H2 ZF 268 290
Pvit_12574 C2H2 ZF 296 318
Pvit_12574 C2H2 ZF 329 351
Pvit_12574 C2H2 ZF 357 379
Pvit_12574 C2H2 ZF 385 409
Pvit_12574 C2H2 ZF 415 437
Pvit_12574 C2H2 ZF 445 467

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

Invalid Input OrderBy

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action