CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_16300
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_16300
T137451_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF276
M04495_2.00
Homo sapiens
NWAAGGWSGWVDMKACNHCCTTWAN
NTWAAGGDNGTMKHBWCSWCCTTWN
SELEX
Yin et al.(2017)
ZNF276_eDBD_HT-SELEX
0.816
0.965
ZNF276
M04496_2.00
Homo sapiens
STTAAGGBSGWVWATACYHCCTTAMN
NKTAAGGDRGTATWBWCSVCCTTAAS
SELEX
Yin et al.(2017)
ZNF276_eDBD_Methyl-HT-SELEX
0.816
0.965
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_16300
C2H2 ZF
381
406
YKCPYQGCTAVYRGADGMKKHIKEHH
Pvit_16300
C2H2 ZF
413
437
PCPHPGCNKVFMIDRYLQRHVKLIH
Pvit_16300
C2H2 ZF
443
465
YICDECGHTFKQRKHLSVHQMRH
Pvit_16300
C2H2 ZF
471
493
LQCEICGFQCRQRASLKYHMTKH
Pvit_16300
C2H2 ZF
501
524
FACDQCGKRFEKAHNLNVHMSMVH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy