cassava21316.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava21316.m1 T137837_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.776 0.696
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.776 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.760 0.652
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.760 0.652
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.760 0.652
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.759 0.652
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.759 0.630
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21316.m1 C2H2 ZF 193 215
cassava21316.m1 C2H2 ZF 252 274

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.759
30147.m014242 Ricinus communis 30147.m014242 I 0.821
30170.m013751 Ricinus communis 30170.m013751 I 0.760
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.760
ZAT10 Arabidopsis thaliana AT1G27730 D 0.760
ZAT4 Arabidopsis thaliana AT2G45120 D 0.776
AZF2 Arabidopsis thaliana AT3G19580 D 0.759
ZAT9 Arabidopsis thaliana AT3G60580 D 0.776
ZAT6 Arabidopsis thaliana AT5G04340 D 0.759
AZF3 Arabidopsis thaliana AT5G43170 I 0.759
Bo1g081350 Brassica oleracea Bo1g081350 I 0.774
Bo1g113530 Brassica oleracea Bo1g113530 I 0.759
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
Bo3g142840 Brassica oleracea Bo3g142840 I 0.760
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bo5g113850 Brassica oleracea Bo5g113850 I 0.759
Bo7g048650 Brassica oleracea Bo7g048650 I 0.760
Bo7g065200 Brassica oleracea Bo7g065200 I 0.759
Bo7g098740 Brassica oleracea Bo7g098740 N 0.756
Bo9g181170 Brassica oleracea Bo9g181170 I 0.759
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.776
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.760
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.759
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.759
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.776
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.782
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.759
Bra000372 Brassica rapa Bra000372 I 0.776
Bra009464 Brassica rapa Bra009464 I 0.759
Bra010922 Brassica rapa Bra010922 I 0.760
Bra012914 Brassica rapa Bra012914 I 0.774
Bra012953 Brassica rapa Bra012953 N 0.756
Bra018817 Brassica rapa Bra018817 I 0.782
Bra022436 Brassica rapa Bra022436 I 0.759
Bra029985 Brassica rapa Bra029985 I 0.774
Bra033666 Brassica rapa Bra033666 I 0.759
Bra038219 Brassica rapa Bra038219 I 0.759
Bra040325 Brassica rapa Bra040325 I 0.776
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.771
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.776
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.759
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.759
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.759
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.759
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.776
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.771
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.758
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.782
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.759
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.759
cassava47027.m1 Manihot esculenta cassava47027.m1 N 0.787
Ca_01586 Cicer arietinum Ca_01586 I 0.759
Ca_18364 Cicer arietinum Ca_18364 I 0.759
Ca_23672 Cicer arietinum Ca_23672 I 0.776
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.759
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.759
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.759
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.759
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.759
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.811
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.776
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.759
Cla001400 Citrullus lanatus Cla001400 I 0.809
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.759
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.759
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.759
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.772
evm.TU.supercontig_111.55 Carica papaya evm.TU.supercontig_111.55 N 0.777
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.776
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.758
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.760
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.759
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.776
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.759
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.771
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.776
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.776
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.759
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.759
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.759
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.759
Gorai.001G049300 Gossypium raimondii Gorai.001G049300 I 0.757
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.776
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.759
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.777
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.783
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.759
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.759
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.759
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.771
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.765
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.786
MDP0000198015 Malus domestica MDP0000198015 I 0.759
MDP0000319225 Malus domestica MDP0000319225 I 0.759
MDP0000573176 Malus domestica MDP0000573176 I 0.759
MDP0000762756 Malus domestica MDP0000762756 I 0.759
mgf006006m Mimulus guttatus mgf006006m I 0.760
mgf021094m Mimulus guttatus mgf021094m I 0.759
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.776
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.758
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.759
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.759
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.771
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.759
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.759
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.776
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.759
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.759
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.759
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.759
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.759
PK10188.1 Cannabis sativa PK10188.1 I 0.759
Pm005390 Prunus mume Pm005390 I 0.759
Pm021284 Prunus mume Pm021284 I 0.759
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.826
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.758
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.776
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.759
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.759
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.759
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.759
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.759
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.759
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.777
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.782
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.759
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.827
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.827
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.776
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.759
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.759
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.760
TCM_000780 Theobroma cacao TCM_000780 I 0.760
TCM_007214 Theobroma cacao TCM_007214 I 0.759
TCM_014903 Theobroma cacao TCM_014903 I 0.764
TCM_034720 Theobroma cacao TCM_034720 I 0.759
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.786
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.774
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.759
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.759
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.758
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.760
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.776
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.759