cassava21529.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava21529.m1 T137838_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769 0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762 0.756
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21529.m1 C2H2 ZF 171 192
cassava21529.m1 C2H2 ZF 193 217

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0327s00220 Populus trichocarpa POPTR_0327s00220 I 0.827
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I 0.827
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I 0.827
TCM_008261 Theobroma cacao TCM_008261 I 0.827
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I 0.827
Eucgr.B03566 Eucalyptus grandis Eucgr.B03566 I 0.821
30128.m008580 Ricinus communis 30128.m008580 I 0.807
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.807
PK25985.1 Cannabis sativa PK25985.1 I 0.802
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.802
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.802
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.802
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.802
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.802
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.802
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.801
OB02G26130 Oryza brachyantha OB02G26130 I 0.801
OBART02G18320 Oryza barthii OBART02G18320 I 0.801
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.801
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.801
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.801
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.801
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.801
Si019690m.g Setaria italica Si019690m.g I 0.801
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.801
OS02G0518500 Oryza sativa OS02G0518500 I 0.801
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.801
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.801
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.801
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.801
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.801
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.801
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.801
F775_04344 Aegilops tauschii F775_04344 I 0.801
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.801
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.801
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.801
GLYMA12G29370 Glycine max GLYMA12G29370 I 0.798
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.796
PGSC0003DMG400019342 Solanum tuberosum PGSC0003DMG400019342 I 0.794
Solyc09g065670.2 Solanum lycopersicum Solyc09g065670.2 I 0.794
SapurV1A.0376s0110 Salix purpurea SapurV1A.0376s0110 I 0.788
POPTR_0005s23660 Populus trichocarpa POPTR_0005s23660 I 0.788
Eucgr.B01471 Eucalyptus grandis Eucgr.B01471 I 0.788
SapurV1A.0444s0180 Salix purpurea SapurV1A.0444s0180 I 0.788
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.784
mgf001929m Mimulus guttatus mgf001929m I 0.784
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.784
Bo2g167740 Brassica oleracea Bo2g167740 I 0.784
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.784
MTR_2g093960 Medicago truncatula MTR_2g093960 I 0.784
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I 0.778
TCM_041053 Theobroma cacao TCM_041053 I 0.778
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.778
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.778
Cla005124 Citrullus lanatus Cla005124 I 0.778
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.778
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.778
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.778
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.778
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.778
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.778
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.778
Ca_14587 Cicer arietinum Ca_14587 I 0.778
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.778
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.778
29643.m000323 Ricinus communis 29643.m000323 I 0.778
MDP0000233477 Malus domestica MDP0000233477 I 0.778
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.778
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.778
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I 0.778
Bra038293 Brassica rapa Bra038293 I 0.778
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.778
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I 0.777
Cla015029 Citrullus lanatus Cla015029 I 0.774
Ca_07799 Cicer arietinum Ca_07799 I 0.774
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.774
Cla018101 Citrullus lanatus Cla018101 I 0.774
MDP0000319344 Malus domestica MDP0000319344 I 0.774
GSMUA_Achr11G07460_001 Musa acuminata GSMUA_Achr11G07460_001 I 0.774
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.774
PK06347.1 Cannabis sativa PK06347.1 I 0.774
Pm030100 Prunus mume Pm030100 I 0.774
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.774
Pm020252 Prunus mume Pm020252 I 0.774
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.774
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.774
mgf017113m Mimulus guttatus mgf017113m I 0.773
Bo9g021710 Brassica oleracea Bo9g021710 I 0.773
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.773
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.772
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.772
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.769
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.769
Bra018535 Brassica rapa Bra018535 I 0.769
JKD Arabidopsis thaliana AT5G03150 D 0.769
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.769
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.769
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.769
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.769
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.769
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.769
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.769
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.769
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.769
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.769
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.769
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.769
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.769
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.769
MDP0000480293 Malus domestica MDP0000480293 I 0.769
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.769
Bo2g003880 Brassica oleracea Bo2g003880 I 0.769
Bo2g100660 Brassica oleracea Bo2g100660 I 0.769
MDP0000826293 Malus domestica MDP0000826293 I 0.769
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.769
MDP0000688613 Malus domestica MDP0000688613 I 0.769
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.769
MDP0000243664 Malus domestica MDP0000243664 I 0.769
Bra009549 Brassica rapa Bra009549 I 0.769
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.769
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.769
Bra005741 Brassica rapa Bra005741 I 0.769
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.769
Bo9g183170 Brassica oleracea Bo9g183170 I 0.769
MDP0000122321 Malus domestica MDP0000122321 I 0.769
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.769
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.769
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.769
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.769
JKD Vitis vinifera VIT_08s0040g02100 I 0.769
Ca_17124 Cicer arietinum Ca_17124 I 0.769
Cla018558 Citrullus lanatus Cla018558 I 0.769
30078.m002347 Ricinus communis 30078.m002347 I 0.769
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.769
Pm001002 Prunus mume Pm001002 I 0.769
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.769
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.769
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.769
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.769
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.769
TCM_004271 Theobroma cacao TCM_004271 I 0.769
TCM_022127 Theobroma cacao TCM_022127 I 0.769
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.769
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.769
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.769
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.769
29883.m001956 Ricinus communis 29883.m001956 I 0.769
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.769
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.769
PK18288.1 Cannabis sativa PK18288.1 I 0.769
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.769
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.769
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.769
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.769
mgf003691m Mimulus guttatus mgf003691m I 0.769
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.769
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.769
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.769
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.769
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.768
GLYMA19G42280 Glycine max GLYMA19G42280 I 0.768
Solyc07g053570.2 Solanum lycopersicum Solyc07g053570.2 I 0.764
GSMUA_Achr4G07200_001 Musa acuminata GSMUA_Achr4G07200_001 I 0.764
GSMUA_Achr11G05700_001 Musa acuminata GSMUA_Achr11G05700_001 I 0.764
SapurV1A.2164s0010 Salix purpurea SapurV1A.2164s0010 I 0.763
Cucsa.181990 Cucumis sativus Cucsa.181990 I 0.763
SapurV1A.1019s0030 Salix purpurea SapurV1A.1019s0030 I 0.763
Sb01g021480 Sorghum bicolor Sb01g021480 I 0.762
Si036003m.g Setaria italica Si036003m.g I 0.762
id1 Zea mays GRMZM2G011357 D 0.762
Ca_02459 Cicer arietinum Ca_02459 I 0.759
MTR_2g090745 Medicago truncatula MTR_2g090745 I 0.759
PGSC0003DMG400009382 Solanum tuberosum PGSC0003DMG400009382 I 0.759
PGSC0003DMG400024700 Solanum tuberosum PGSC0003DMG400024700 I 0.759
Solyc01g099340.2 Solanum lycopersicum Solyc01g099340.2 I 0.759
Aquca_007_00164 Aquilegia coerulea Aquca_007_00164 I 0.759
chr5.CM0299.500.nd Lotus japonicus chr5.CM0299.500.nd I 0.758