cassava21529.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava21529.m1 T137838_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769 0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762 0.756
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21529.m1 C2H2 ZF 171 192
cassava21529.m1 C2H2 ZF 193 217

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

Invalid Input OrderBy

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action