cassava22193.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava22193.valid.m1 T137840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.807 0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.807 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22193.valid.m1 C2H2 ZF 251 273
cassava22193.valid.m1 C2H2 ZF 272 303

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_07402 Aegilops tauschii F775_07402 N 0.000
MLOC_71830 Hordeum vulgare MLOC_71830 N 0.000
OB09G26140 Oryza brachyantha OB09G26140 N 0.000
OGLUM09G20250 Oryza glumaepatula OGLUM09G20250 N 0.000
ORGLA09G0157300 Oryza glaberrima ORGLA09G0157300 N 0.000
Pavir.J19225 Panicum virgatum Pavir.J19225 N 0.000
Sb02g032665 Sorghum bicolor Sb02g032665 N 0.000
Traes_5AL_A72B96437 Triticum aestivum Traes_5AL_A72B96437 N 0.000
Traes_5BL_DCE703499 Triticum aestivum Traes_5BL_DCE703499 N 0.000
Traes_5DL_4E9E5C873 Triticum aestivum Traes_5DL_4E9E5C873 N 0.000
TRIUR3_21194 Triticum urartu TRIUR3_21194 N 0.000