CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava22193.valid.m1
(
Manihot esculenta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
cassava22193.valid.m1
T137840_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.807
0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.807
0.933
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava22193.valid.m1
C2H2 ZF
251
273
YTCSRCNTKKFSVIADLRTHEKH
cassava22193.valid.m1
C2H2 ZF
272
303
KHCGKDRWLCSCGTTFSRKDKLFGHIALFQGH
Links
Other
C2H2 ZF
family TFs
Other
Manihot esculenta
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy