cassava22193.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava22193.valid.m1 T137840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.807 0.933
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.807 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22193.valid.m1 C2H2 ZF 251 273
cassava22193.valid.m1 C2H2 ZF 272 303

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BOTBODRAFT_92498 Botryobasidium botryosum BOTBODRAFT_92498 I 0.000
A1Q1_03604 Trichosporon asahii A1Q1_03604 N 0.000
PILCRDRAFT_148646 Piloderma croceum PILCRDRAFT_148646 N 0.000
PIIN_03898 Piriformospora indica PIIN_03898 N 0.000
PHLGIDRAFT_221070 Phlebiopsis gigantea PHLGIDRAFT_221070 N 0.000
PHACADRAFT_249271 Phanerochaete carnosa PHACADRAFT_249271 N 0.000
PAXRUDRAFT_831153 Paxillus rubicundulus PAXRUDRAFT_831153 N 0.000
MVLG_01921 Microbotryum violaceum MVLG_01921 N 0.000
Moror_7350 Moniliophthora roreri Moror_7350 N 0.000
PISMIDRAFT_670789 Pisolithus microcarpus PISMIDRAFT_670789 N 0.000
PLEOSDRAFT_1092752 Pleurotus ostreatus PLEOSDRAFT_1092752 N 0.000
POSPLDRAFT_96125 Postia placenta POSPLDRAFT_96125 N 0.000
RHTO_03592 Rhodosporidium toruloides RHTO_03592 N 0.000
RTG_00886 Rhodotorula glutinis RTG_00886 N 0.000
SCHCODRAFT_254923 Schizophyllum commune SCHCODRAFT_254923 N 0.000
SCLCIDRAFT_138221 Scleroderma citrinum SCLCIDRAFT_138221 N 0.000
SERLA73DRAFT_177482 Serpula lacrymans SERLA73DRAFT_177482 N 0.000
estExt_fgenesh3_kg.C_40166 Heterobasidion annosum estExt_fgenesh3_kg.C_40166 N 0.000
M413DRAFT_441255 Hebeloma cylindrosporum M413DRAFT_441255 N 0.000
M404DRAFT_19643 Pisolithus tinctorius M404DRAFT_19643 N 0.000
AGABI2DRAFT_191870 Agaricus bisporus AGABI2DRAFT_191870 N 0.000
CC1G_14628 Coprinopsis cinerea CC1G_14628 N 0.000
CERSUDRAFT_80362 Ceriporiopsis subvermispora CERSUDRAFT_80362 N 0.000
CNA04400 Cryptococcus neoformans CNA04400 N 0.000
CY34DRAFT_797697 Suillus luteus CY34DRAFT_797697 N 0.000
DICSQDRAFT_61110 Dichomitus squalens DICSQDRAFT_61110 N 0.000
DRE_04511 Drechslerella stenobrocha DRE_04511 N 0.000
FOMPIDRAFT_1062771 Fomitopsis pinicola FOMPIDRAFT_1062771 N 0.000
GALMADRAFT_133154 Galerina marginata GALMADRAFT_133154 N 0.000
GLOTRDRAFT_136174 Gloeophyllum trabeum GLOTRDRAFT_136174 N 0.000
H072_4770 Dactylellina haptotyla H072_4770 N 0.000
HETIRDRAFT_313274 Heterobasidion irregulare HETIRDRAFT_313274 N 0.000
JAAARDRAFT_145306 Jaapia argillacea JAAARDRAFT_145306 N 0.000
K443DRAFT_88561 Laccaria amethystina K443DRAFT_88561 N 0.000
L804_02024 Cryptococcus gattii L804_02024 N 0.000
LACBIDRAFT_311793 Laccaria bicolor LACBIDRAFT_311793 N 0.000
fgeneshTM_pg.1_#_1400 Tremella mesenterica fgeneshTM_pg.1_#_1400 N 0.000