cassava29681.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava29681.valid.m1 T137852_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.822 0.953
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.822 0.953
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.794 0.930
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.794 0.930
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.794 0.884
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.794 0.884
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.788 0.884
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.788 0.860
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.788 0.860
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.788 0.860
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.765 0.837
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.765 0.837
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29681.valid.m1 C2H2 ZF 137 158
cassava29681.valid.m1 C2H2 ZF 157 183

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

665 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_76369 Agaricus bisporus AGABI2DRAFT_76369 N 0.000
M408DRAFT_332089 Serendipita vermifera M408DRAFT_332089 N 0.000
M413DRAFT_445041 Hebeloma cylindrosporum M413DRAFT_445041 N 0.000
Moror_14523 Moniliophthora roreri Moror_14523 N 0.000
MPER_14143 Moniliophthora perniciosa MPER_14143 N 0.000
PHLGIDRAFT_72355 Phlebiopsis gigantea PHLGIDRAFT_72355 N 0.000
PIIN_06165 Piriformospora indica PIIN_06165 N 0.000
PILCRDRAFT_2231 Piloderma croceum PILCRDRAFT_2231 N 0.000
PISMIDRAFT_677489 Pisolithus microcarpus PISMIDRAFT_677489 N 0.000
PLEOSDRAFT_1026709 Pleurotus ostreatus PLEOSDRAFT_1026709 N 0.000
POSPLDRAFT_106321 Postia placenta POSPLDRAFT_106321 N 0.000
PUNSTDRAFT_35810 Punctularia strigosozonata PUNSTDRAFT_35810 N 0.000
SCHCODRAFT_112825 Schizophyllum commune SCHCODRAFT_112825 N 0.000
SCLCIDRAFT_1215700 Scleroderma citrinum SCLCIDRAFT_1215700 N 0.000
SERLA73DRAFT_47923 Serpula lacrymans SERLA73DRAFT_47923 N 0.000
V565_121420 Rhizoctonia solani V565_121420 N 0.000
fgenesh1_pg.C_scaffold_9000399 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000399 N 0.000
M407DRAFT_173335 Tulasnella calospora M407DRAFT_173335 N 0.000
M407DRAFT_11896 Tulasnella calospora M407DRAFT_11896 N 0.000
BOTBODRAFT_59007 Botryobasidium botryosum BOTBODRAFT_59007 N 0.000
CC1G_01657 Coprinopsis cinerea CC1G_01657 N 0.000
CERSUDRAFT_54127 Ceriporiopsis subvermispora CERSUDRAFT_54127 N 0.000
CY34DRAFT_93409 Suillus luteus CY34DRAFT_93409 N 0.000
DICSQDRAFT_63611 Dichomitus squalens DICSQDRAFT_63611 N 0.000
FOMPIDRAFT_1134046 Fomitopsis pinicola FOMPIDRAFT_1134046 N 0.000
GALMADRAFT_245424 Galerina marginata GALMADRAFT_245424 N 0.000
GLOTRDRAFT_41454 Gloeophyllum trabeum GLOTRDRAFT_41454 N 0.000
HETIRDRAFT_248080 Heterobasidion irregulare HETIRDRAFT_248080 N 0.000
HYDPIDRAFT_116574 Hydnomerulius pinastri HYDPIDRAFT_116574 N 0.000
JAAARDRAFT_36714 Jaapia argillacea JAAARDRAFT_36714 N 0.000
K443DRAFT_671476 Laccaria amethystina K443DRAFT_671476 N 0.000
LACBIDRAFT_318917 Laccaria bicolor LACBIDRAFT_318917 N 0.000
M378DRAFT_78050 Amanita muscaria M378DRAFT_78050 N 0.000
M404DRAFT_171117 Pisolithus tinctorius M404DRAFT_171117 N 0.000
M404DRAFT_72662 Pisolithus tinctorius M404DRAFT_72662 N 0.000
EuGene5000151 Heterobasidion annosum EuGene5000151 N 0.000