cassava39829.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava39829.m1 T137875_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39829.m1 C2H2 ZF 256 277
cassava39829.m1 C2H2 ZF 276 305

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.827
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.827
TCM_005892 Theobroma cacao TCM_005892 N 0.827
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.827
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.821
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.821
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.821
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.821
30061.m000294 Ricinus communis 30061.m000294 N 0.821
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.821
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.818
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.818
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.818
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.818
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.818
MDP0000144266 Malus domestica MDP0000144266 N 0.816
29908.m006047 Ricinus communis 29908.m006047 N 0.814
MDP0000142494 Malus domestica MDP0000142494 N 0.814
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.814
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.808
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.808
TT1 Vitis vinifera VIT_18s0001g05860 N 0.808
TCM_034881 Theobroma cacao TCM_034881 N 0.808
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.808
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.808
MDP0000573922 Malus domestica MDP0000573922 N 0.805
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.803
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.803
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.803
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.802
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.802
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.802
30055.m001542 Ricinus communis 30055.m001542 N 0.802
Pm001374 Prunus mume Pm001374 N 0.802
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.802
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.802
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.802
TCM_041441 Theobroma cacao TCM_041441 N 0.802
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.802
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.802
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.802
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.802
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.802
MDP0000300013 Malus domestica MDP0000300013 N 0.802
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.802
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.802
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.802
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.802
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.802
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.802
MDP0000131949 Malus domestica MDP0000131949 N 0.802
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.802
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.798
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.797
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.797
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.797
TCM_024788 Theobroma cacao TCM_024788 N 0.797
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.797
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.797
Cla008187 Citrullus lanatus Cla008187 N 0.797
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.797
Ca_07269 Cicer arietinum Ca_07269 N 0.797
Cla015481 Citrullus lanatus Cla015481 N 0.797
MDP0000601705 Malus domestica MDP0000601705 N 0.797
Pm025853 Prunus mume Pm025853 N 0.797
NTT Vitis vinifera VIT_08s0007g08070 N 0.797
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.797
27810.m000651 Ricinus communis 27810.m000651 N 0.797
mgf022319m Mimulus guttatus mgf022319m N 0.797
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.797
Bra003295 Brassica rapa Bra003295 N 0.797
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.797
Bo8g092070 Brassica oleracea Bo8g092070 N 0.797
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.797
Bo6g073120 Brassica oleracea Bo6g073120 N 0.797
Bra014612 Brassica rapa Bra014612 N 0.797
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.797
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.797
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.797
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.797
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.797
PK03705.1 Cannabis sativa PK03705.1 N 0.797
Bo4g111000 Brassica oleracea Bo4g111000 N 0.797
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.797
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.797
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.797
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.797
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.797
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.797
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.797
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.797
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.797
WIP2 Arabidopsis thaliana AT3G57670 N 0.797
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.797
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.797
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.797
Bra007346 Brassica rapa Bra007346 N 0.796
Ca_16482 Cicer arietinum Ca_16482 N 0.796
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.796
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.793
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.793
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.793
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.792
Bo5g081360 Brassica oleracea Bo5g081360 N 0.791
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.791
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.791
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.791
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.791
Pm000471 Prunus mume Pm000471 N 0.791
MDP0000403797 Malus domestica MDP0000403797 N 0.791
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.791
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.791
MDP0000580545 Malus domestica MDP0000580545 N 0.791
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.791
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.791
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.790
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.790
Ca_27078 Cicer arietinum Ca_27078 N 0.790
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.788
Cla000184 Citrullus lanatus Cla000184 N 0.788
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.788
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.788
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.787
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.787
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.787
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.787
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.787
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.787
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.787
OS08G0504000 Oryza sativa OS08G0504000 N 0.787
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.787
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.787
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.787
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.787
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.787
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.787
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.787
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.787
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.787
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.787
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.787
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.787
OBART08G19670 Oryza barthii OBART08G19670 N 0.787
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.787
OS09G0485600 Oryza sativa OS09G0485600 N 0.787
OB08G26650 Oryza brachyantha OB08G26650 N 0.787
Si013819m.g Setaria italica Si013819m.g N 0.787
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.784
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.784
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.784
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.784
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.784
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.784
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.784
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.782
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.782
OBART06G20890 Oryza barthii OBART06G20890 N 0.782
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.782
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.782
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.782
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.782
Ca_21713 Cicer arietinum Ca_21713 N 0.782
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.782
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.782
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.782
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.782
TCM_040610 Theobroma cacao TCM_040610 N 0.782
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.782
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.782
30169.m006417 Ricinus communis 30169.m006417 N 0.782
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.782
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.781
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.781
Si029897m.g Setaria italica Si029897m.g N 0.781
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.781
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.781
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.781
F775_14972 Aegilops tauschii F775_14972 N 0.781
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.781
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.781
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.781
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.781
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.778
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.778
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.778
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.778
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.778
Ca_07051 Cicer arietinum Ca_07051 N 0.778
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.778
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.777
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.774
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.774
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.774
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.774
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.774
PK05257.1 Cannabis sativa PK05257.1 N 0.772
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.772
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.772
Bra031621 Brassica rapa Bra031621 N 0.769
Bo8g112550 Brassica oleracea Bo8g112550 N 0.769
Bra018638 Brassica rapa Bra018638 N 0.769
Bo5g008880 Brassica oleracea Bo5g008880 N 0.769
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.768
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.768
mgf019910m Mimulus guttatus mgf019910m N 0.767
Cla008675 Citrullus lanatus Cla008675 N 0.767
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.767
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.765
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.764
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.764
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.764
MDP0000303483 Malus domestica MDP0000303483 N 0.764
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.764
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.764
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.764
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.764
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.764
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.764
TCM_011858 Theobroma cacao TCM_011858 N 0.764
Ca_08435 Cicer arietinum Ca_08435 N 0.764
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.764
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.764
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.764
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.764
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.764
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.764
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.764
Ca_24699 Cicer arietinum Ca_24699 N 0.764
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.764
mgf022981m Mimulus guttatus mgf022981m N 0.764
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.764
Cla002714 Citrullus lanatus Cla002714 N 0.764
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.764
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.764
Pm029018 Prunus mume Pm029018 N 0.764
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.764
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.764
WIP3 Arabidopsis thaliana AT1G08290 N 0.759
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.759
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.759
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.759
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.759
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.758
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.758
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.758
WIP6 Arabidopsis thaliana AT1G13290 N 0.758
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.758
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.758
Bo5g015200 Brassica oleracea Bo5g015200 N 0.758
Bra019822 Brassica rapa Bra019822 N 0.758
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.758
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.758
OS06G0612300 Oryza sativa OS06G0612300 N 0.758
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.758
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.758
Si006616m.g Setaria italica Si006616m.g N 0.758
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.758
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.758
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.758
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.758
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.758
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.758
OB06G28740 Oryza brachyantha OB06G28740 N 0.758
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.758
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.758
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.758
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.758
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.758