cassava44390.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava44390.m1 T137884_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava44390.m1 C2H2 ZF 218 239
cassava44390.m1 C2H2 ZF 238 264

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.768
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.784
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.791
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.770
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.770
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.770
mgf022981m Mimulus guttatus mgf022981m N 0.778
mgf022319m Mimulus guttatus mgf022319m N 0.784
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.768
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.768
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.784
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.784
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.779
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.784
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.791
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.788
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.788
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.784
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.788
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.778
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.784
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.821
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.784
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.797
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.773
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.773
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.802
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.784
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.784
Pm000471 Prunus mume Pm000471 N 0.778
Cla015481 Citrullus lanatus Cla015481 N 0.784
Cla008187 Citrullus lanatus Cla008187 N 0.784
Cla000184 Citrullus lanatus Cla000184 N 0.802
Ca_27078 Cicer arietinum Ca_27078 N 0.803
Ca_21713 Cicer arietinum Ca_21713 N 0.768
Ca_16482 Cicer arietinum Ca_16482 N 0.783
Ca_07269 Cicer arietinum Ca_07269 N 0.784
Ca_07051 Cicer arietinum Ca_07051 N 0.764
TT1 Vitis vinifera VIT_18s0001g05860 N 0.821
NTT Vitis vinifera VIT_08s0007g08070 N 0.784
Pm001374 Prunus mume Pm001374 N 0.788
Pm025853 Prunus mume Pm025853 N 0.784
27810.m000651 Ricinus communis 27810.m000651 N 0.784
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.775
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.784
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.814
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.784
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.763
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.788
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.788
30169.m006417 Ricinus communis 30169.m006417 N 0.768
30061.m000294 Ricinus communis 30061.m000294 N 0.808
30055.m001542 Ricinus communis 30055.m001542 N 0.788
29908.m006047 Ricinus communis 29908.m006047 N 0.827
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.788
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.797
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.768
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.774
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.774
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.768
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.784
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.788
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.779
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.821
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.778
MDP0000601705 Malus domestica MDP0000601705 N 0.784
MDP0000580545 Malus domestica MDP0000580545 N 0.778
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.784
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.794
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.788
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.782
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.784
PK05257.1 Cannabis sativa PK05257.1 N 0.758
PK03705.1 Cannabis sativa PK03705.1 N 0.784
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.773
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.784
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.761
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.779
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.779
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.764
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.761
MDP0000573922 Malus domestica MDP0000573922 N 0.818
MDP0000403797 Malus domestica MDP0000403797 N 0.778
MDP0000300013 Malus domestica MDP0000300013 N 0.788
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.788
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.790
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.790
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.784
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.784
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.788
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.788
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.778
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.784
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.784
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.788
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.778
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.790
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.821
MDP0000144266 Malus domestica MDP0000144266 N 0.803
MDP0000142494 Malus domestica MDP0000142494 N 0.801
MDP0000131949 Malus domestica MDP0000131949 N 0.788
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.804
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.797
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.759
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.759
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.804
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.764
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.764
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.768
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.780
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.774
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.775
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.814
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.774
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.768
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.774
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.768
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.784
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.808
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.803
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.788
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.808
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.768
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.804
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.764
OBART09G03640 Oryza barthii OBART09G03640 N 0.758
OBART08G19670 Oryza barthii OBART08G19670 N 0.774
OBART06G20890 Oryza barthii OBART06G20890 N 0.768
OB08G26650 Oryza brachyantha OB08G26650 N 0.774
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.768
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.768
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.774
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.774
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.778
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.784
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.808
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.803
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.808
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.788
Bra003295 Brassica rapa Bra003295 N 0.784
Bo8g112550 Brassica oleracea Bo8g112550 N 0.782
Bo8g092070 Brassica oleracea Bo8g092070 N 0.784
Bo6g073120 Brassica oleracea Bo6g073120 N 0.784
Bo5g081360 Brassica oleracea Bo5g081360 N 0.778
Bo5g008880 Brassica oleracea Bo5g008880 N 0.782
Bo4g111000 Brassica oleracea Bo4g111000 N 0.784
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.774
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.758
WIP2 Arabidopsis thaliana AT3G57670 N 0.784
WIP3 Arabidopsis thaliana AT1G08290 N 0.773
Bra007346 Brassica rapa Bra007346 N 0.782
Bra014612 Brassica rapa Bra014612 N 0.784
Bra018638 Brassica rapa Bra018638 N 0.782
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.788
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.788
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.808
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.784
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.784
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.791
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.773
F775_14972 Aegilops tauschii F775_14972 N 0.768
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.768
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.774
Bra031621 Brassica rapa Bra031621 N 0.782
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.784
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.768
Si029897m.g Setaria italica Si029897m.g N 0.768
Si013819m.g Setaria italica Si013819m.g N 0.774
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.768
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.768
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.774
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.768
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.778
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.788
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.784
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.784
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.788
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.804
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.778
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.760
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.768
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.768
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.768
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.768
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.768
TCM_041441 Theobroma cacao TCM_041441 N 0.788
TCM_040610 Theobroma cacao TCM_040610 N 0.768
TCM_034881 Theobroma cacao TCM_034881 N 0.821
TCM_024788 Theobroma cacao TCM_024788 N 0.784
TCM_005892 Theobroma cacao TCM_005892 N 0.814
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.778
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.814
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.788
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.768
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.774
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.774
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.758
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.774
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.774
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.774
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.758
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.774
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.758
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.774
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.774
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.774
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.758
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.758
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.811
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.814
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.760
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.778
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.784
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.778
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.770
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.804
OS09G0485600 Oryza sativa OS09G0485600 N 0.774
OS08G0504000 Oryza sativa OS08G0504000 N 0.774
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.774
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.758