CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.186.49.1
(
Physcomitrella patens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
e_gw1.186.49.1
T138014_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN
NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.766
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.186.49.1
C2H2 ZF
25
54
QYCPIRTFNCNFCTRNFRTAQALGGHMNVH
Links
Other
C2H2 ZF
family TFs
Other
Physcomitrella patens
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
0.827
OB02G44430
Oryza brachyantha
OB02G44430
I
0.817
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
0.814
Cla008944
Citrullus lanatus
Cla008944
I
0.814
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
0.776
Bra013257
Brassica rapa
Bra013257
I
0.776
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
0.776
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
0.776
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
0.776
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
0.776
Cla021878
Citrullus lanatus
Cla021878
I
0.776
GLYMA11G34285
Glycine max
GLYMA11G34285
I
0.776
Bo1g017920
Brassica oleracea
Bo1g017920
I
0.776
AT4G17810
Arabidopsis thaliana
AT4G17810
I
0.776
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
0.774
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
0.774
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
0.769
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
0.769
GRMZM2G344974
Zea mays
GRMZM2G344974
I
0.769
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
0.769
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
0.769
Si019563m.g
Setaria italica
Si019563m.g
I
0.769
Sb04g037590
Sorghum bicolor
Sb04g037590
I
0.769
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
0.766
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
0.766
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
0.766
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
0.766
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
0.766
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
0.766
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
0.766
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
0.766
29603.m000536
Ricinus communis
29603.m000536
I
0.766
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
0.766
Pm009420
Prunus mume
Pm009420
I
0.766
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
0.766
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
0.766
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
0.766
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
0.766
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
0.766
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
0.766
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
0.766
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
0.766
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
0.766
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
0.766
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
0.766
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
0.766
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
0.766
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
0.766
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
0.766
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
0.766
MDP0000225209
Malus domestica
MDP0000225209
I
0.766
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
0.766
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
0.766
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
0.766
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
0.766
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
0.766
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
0.766
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
0.766
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
0.766
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
0.766
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
0.766
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
0.766
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
0.766
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
0.766
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
0.766
MLOC_76482
Hordeum vulgare
MLOC_76482
I
0.766
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
0.766
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
0.766
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
0.766
GRMZM2G000126
Zea mays
GRMZM2G000126
I
0.766
OB02G10110
Oryza brachyantha
OB02G10110
I
0.766
OB05G18710
Oryza brachyantha
OB05G18710
I
0.766
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
0.766
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
0.766
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
0.766
OBART11G23770
Oryza barthii
OBART11G23770
I
0.766
OBART05G10090
Oryza barthii
OBART05G10090
I
0.766
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
0.766
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
0.766
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
0.766
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
0.766
RBE
Arabidopsis thaliana
AT5G06070
D
0.766
SUP
Arabidopsis thaliana
AT3G23130
I
0.766
ZFP11
Arabidopsis thaliana
AT2G42410
I
0.766
Bo1g102390
Brassica oleracea
Bo1g102390
I
0.766
Bo3g003640
Brassica oleracea
Bo3g003640
I
0.766
Bra023759
Brassica rapa
Bra023759
I
0.766
F775_00917
Aegilops tauschii
F775_00917
I
0.766
Bra009160
Brassica rapa
Bra009160
I
0.766
Bra005874
Brassica rapa
Bra005874
I
0.766
Bo9g176590
Brassica oleracea
Bo9g176590
I
0.766
OLONG_023754
Oryza longistaminata
OLONG_023754
I
0.766
OLONG_005038
Oryza longistaminata
OLONG_005038
I
0.766
Si024070m.g
Setaria italica
Si024070m.g
I
0.766
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
0.766
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
0.766
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
0.766
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
0.766
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
0.766
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
0.766
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
0.766
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
0.766
Si019050m.g
Setaria italica
Si019050m.g
I
0.766
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
0.766
OS11G0707300
Oryza sativa
OS11G0707300
I
0.766
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
0.766
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
0.766
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
0.766
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
0.766
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
0.766
TCM_021875
Theobroma cacao
TCM_021875
I
0.766
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
0.766
OS05G0286100
Oryza sativa
OS05G0286100
I
0.766
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
0.766
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
0.766
Ca_12901
Cicer arietinum
Ca_12901
I
0.764
GLYMA12G35930
Glycine max
GLYMA12G35930
I
0.764
mg013419m
Mimulus guttatus
mg013419m
I
0.764
GLYMA13G34450
Glycine max
GLYMA13G34450
I
0.764
GLYMA12G06340
Glycine max
GLYMA12G06340
N
0.757
MTR_4g064873
Medicago truncatula
MTR_4g064873
N
0.757
Cucsa.117650
Cucumis sativus
Cucsa.117650
N
0.757
cassava32634.m1
Manihot esculenta
cassava32634.m1
N
0.757
Cla008348
Citrullus lanatus
Cla008348
N
0.757