e_gw.37.272.1 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 e_gw.37.272.1 T138234_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN

NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.802 0.913
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN

NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.802 0.913
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT

AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.800 0.899
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT

AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.800 0.899
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN

NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.800 0.899
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.37.272.1 C2H2 ZF 6 28
e_gw.37.272.1 C2H2 ZF 34 56
e_gw.37.272.1 C2H2 ZF 62 84
e_gw.37.272.1 C2H2 ZF 90 112
e_gw.37.272.1 C2H2 ZF 118 140
e_gw.37.272.1 C2H2 ZF 146 169

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action