e_gw.374.48.1 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 e_gw.374.48.1 T138236_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OVOL1
M04556_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_HT-SELEX 		0.769 0.769
OVOL1
M08919_2.00 		Homo sapiens
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_HUMAN.H11MO.0.C 		0.769 0.769
Ovol1
M08974_2.00 		Mus musculus
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_MOUSE.H11MO.0.C 		0.769 0.769
OVOL1
M04557_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_Methyl-HT-SELEX 		0.769 0.769
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.374.48.1 C2H2 ZF 1 19
e_gw.374.48.1 C2H2 ZF 25 47
e_gw.374.48.1 C2H2 ZF 53 76

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action