CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw.471.22.1
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
e_gw.471.22.1
T138304_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GLIS3
M02880_2.00
Homo sapiens
CTTYGTGGGGGGTM
KACCCCCCACRAAG
SELEX
Jolma et al.(2013)
GLIS3_1
0.807
0.936
GLIS3
M10169_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_01
0.807
0.936
GLIS3
M10170_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_Q6_01
0.807
0.936
GLIS3
M10171_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_Q6
0.807
0.936
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.471.22.1
C2H2 ZF
1
24
CRWIDCNMTFTEQEELVRHIEKVH
e_gw.471.22.1
C2H2 ZF
33
60
FTCFWAGCPRRYKPFNARYKLLIHMRVH
e_gw.471.22.1
C2H2 ZF
67
90
KCTFEGCNKAFSRLENLKIHLRSH
e_gw.471.22.1
C2H2 ZF
96
120
YLCQHAGCQKAFSNSSDRAKHQRTH
e_gw.471.22.1
C2H2 ZF
126
148
YACQIPGCTKRYTDPSSLRKHVK
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy