CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_chr_1.20297
(
Pichia stipitis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh1_pg.C_chr_1.20297
T138536_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STP1
M00910_2.00
Saccharomyces cerevisiae
NYACGGCRCN
NGYGCCGTRN
PBM
Gordan et al.(2011)
Stp1
0.757
0.739
STP1
M08414_2.00
Saccharomyces cerevisiae
BGCGGCKB
VMGCCGCV
ChIP-chip
Mathelier et al.(2014)
MA0394.1
0.757
0.739
STP1
M08519_2.00
Saccharomyces cerevisiae
YRCGGCKB
VMGCCGYR
Misc
DeBoer et al.(2011)
YDR463W_660
0.757
0.739
STP1
M10390_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STP1_01
0.757
0.739
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_chr_1.20297
C2H2 ZF
280
302
HQCPHCDATFKIRGYLTRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Pichia stipitis
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy