CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
(
Nectria haematococca
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
T138552_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU03975
M01879_2.00
Neurospora crassa
NNRCWYDDNN
NNHHRWGYNN
PBM
Weirauch et al.(2014)
pTH9677
0.792
0.913
HCBG_04116
M01448_2.00
Histoplasma capsulatum
RHCHGWGCDB
VHGCWCDGDY
PBM
Najafabadi et al.(2015a)
pTH11149
0.787
0.891
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
C2H2 ZF
110
132
YPCSTCGKGFARRSDLARHERIH
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
C2H2 ZF
138
162
HVCDWPNCGKQFIQRSALTVHQRVH
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
C2H2 ZF
168
190
HHCETCAKPFSDSSSLARHRRTH
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476
C2H2 ZF
196
220
YKCPYADCQKTFTRRTTLTRHQNHH
Links
Other
C2H2 ZF
family TFs
Other
Nectria haematococca
TFs
131 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy