CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_kg.C_190001
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh2_kg.C_190001
T138566_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.780
0.858
wor
M03664_2.00
Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC
SELEX
Nitta et al.(2015)
wor_1
0.759
0.805
wor
M03665_2.00
Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH
SELEX
Nitta et al.(2015)
wor_2
0.759
0.805
wor
M06051_2.00
Drosophila melanogaster
CACCTGY
RCAGGTG
B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983
0.759
0.805
wor
M06052_2.00
Drosophila melanogaster
VCACCTGY
RCAGGTGB
B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983
0.759
0.805
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_kg.C_190001
C2H2 ZF
112
134
YQCPQCAKSYSTYSGLTKHKQFH
estExt_fgenesh2_kg.C_190001
C2H2 ZF
143
165
FNCKYCDKVYVSLGALKMHIRTH
estExt_fgenesh2_kg.C_190001
C2H2 ZF
169
191
CKCKICGKAFSRPWLLQGHVRTH
estExt_fgenesh2_kg.C_190001
C2H2 ZF
197
219
FACPHCSRAFADRSNLRAHLQTH
estExt_fgenesh2_kg.C_190001
C2H2 ZF
225
245
YSCKNCSKTFSRMSLLTKHEE
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy