estExt_fgenesh2_pg.C_1600113 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh2_pg.C_1600113 T138625_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sob
M03674_2.00
Drosophila melanogaster
RCTACYGNRTTACGCV

BGCGTAAYNCRGTAGY
SELEX
Nitta et al.(2015)
sob_1
0.805 0.887
sob
M03675_2.00
Drosophila melanogaster
NGCGTAABNSNRGTAGY

RCTACYNSNVTTACGCN
SELEX
Nitta et al.(2015)
sob_2
0.805 0.887
sob
M06088_2.00
Drosophila melanogaster
GCTWCTGBDNBDV

BHVNHVCAGWAGC
B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892
0.805 0.887
sob
M06089_2.00
Drosophila melanogaster
BDGCTACYGKDBNN

NNVHMCRGTAGCHV
B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892
0.805 0.887
bowl
M03676_2.00
Drosophila melanogaster
GCGTAABACNRGKAGYN

NRCTMCYNGTVTTACGC
SELEX
Nitta et al.(2015)
bowl_1
0.803 0.870
bowl
M03677_2.00
Drosophila melanogaster
NGCTACYGTRTTACGCN

NGCGTAAYACRGTAGCN
SELEX
Nitta et al.(2015)
bowl_2
0.803 0.870
bowl
M06090_2.00
Drosophila melanogaster
RCTWCYGK

MCRGWAGY
B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893
0.803 0.870
OSR2
M04521_2.00
Homo sapiens
NGCTACYGBD

HVCRGTAGCN
SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX
0.799 0.930
OSR2
M08324_2.00
Homo sapiens
NBDGCTNCTGN

NCAGNAGCHVN
ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME
0.799 0.930
OSR2
M08908_2.00
Homo sapiens
NBHNYWGCTNCTSHDB

VHDSAGNAGCWRNDVN
Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C
0.799 0.930
OSR2
M04522_2.00
Homo sapiens
NGCTACTGND

HNCAGTAGCN
SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX
0.799 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 468 490
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 496 518
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 524 546
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 552 574
estExt_fgenesh2_pg.C_1600113 C2H2 ZF 580 602

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL007453 Aedes aegypti AAEL007453 I 0.805
AAEL008961 Aedes aegypti AAEL008961 I 0.803
AATE001257 Anopheles atroparvus AATE001257 I 0.803
ACEP20577 Atta cephalotes ACEP20577 I 0.797
ACEP20581 Atta cephalotes ACEP20581 I 0.803
ACOM030727 Anopheles coluzzii ACOM030727 I 0.803
ACYPI007518 Acyrthosiphon pisum ACYPI007518 I 0.805
ACYPI008391 Acyrthosiphon pisum ACYPI008391 I 0.805
ADAC005347 Anopheles darlingi ADAC005347 I 0.795
ADAC010373 Anopheles darlingi ADAC010373 I 0.795
AEPI004813 Anopheles epiroticus AEPI004813 I 0.803
AFAF004720 Anopheles farauti AFAF004720 I 0.803
AFUN006320 Anopheles funestus AFUN006320 I 0.803
AMEC005957 Anopheles melas AMEC005957 I 0.803
AMEM017192 Anopheles merus AMEM017192 I 0.803
AMIN006295 Anopheles minimus AMIN006295 I 0.803
ASTEI01738 Anopheles stephensi ASTEI01738 I 0.803
bowl Drosophila melanogaster FBgn0004893 D 0.803
Cflo_02188--XP_001120905.1_APIME Camponotus floridanus Cflo_02188--XP_001120905.1_APIME I 0.799
Cflo_02191--XP_393879.3_APIME Camponotus floridanus Cflo_02191--XP_393879.3_APIME I 0.803
CPIJ010652 Culex quinquefasciatus CPIJ010652 I 0.803
CpipJ_CPIJ010652 Culex pipiens CpipJ_CPIJ010652 I 0.803
DAPPUDRAFT_238529 Daphnia pulex DAPPUDRAFT_238529 I 0.800
DAPPUDRAFT_347540 Daphnia pulex DAPPUDRAFT_347540 I 0.796
ENSAMEG00000000519 Ailuropoda melanoleuca ENSAMEG00000000519 I 0.799
ENSFALG00000005731 Ficedula albicollis ENSFALG00000005731 I 0.799
ENSGALG00000016016 Gallus gallus ENSGALG00000016016 I 0.799
ENSMMUP00000029201 Macaca fascicularis ENSMMUP00000029201 I 0.799
ENSNLEG00000002725 Nomascus leucogenys ENSNLEG00000002725 I 0.799
ENSOARG00000002902 Ovis aries ENSOARG00000002902 I 0.799
ENSONIG00000006859 Oreochromis niloticus ENSONIG00000006859 I 0.799
ENSPPYG00000018781 Pongo abelii ENSPPYG00000018781 I 0.799
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.799
ENSTSYG00000013426 Tarsius syrichta ENSTSYG00000013426 I 0.799
estExt_fgenesh2_pg.C_1600105 Branchiostoma floridae estExt_fgenesh2_pg.C_1600105 I 0.827
fgenesh2_pg.scaffold_160000107 Branchiostoma floridae fgenesh2_pg.scaffold_160000107 I 0.827
fgenesh2_pg.scaffold_160000114 Branchiostoma floridae fgenesh2_pg.scaffold_160000114 I 0.827
GA10014 Drosophila pseudoobscura FBgn0070073 I 0.803
GA25976 Drosophila pseudoobscura FBgn0247353 I 0.805
GB49901 Apis mellifera GB49901 I 0.803
GB49914 Apis mellifera GB49914 I 0.805
GD22744 Drosophila simulans FBgn0194140 I 0.802
GD23254 Drosophila simulans FBgn0194642 I 0.803
GE14841 Drosophila yakuba FBgn0232433 I 0.805
GE18258 Drosophila yakuba FBgn0235686 I 0.803
GF14663 Drosophila ananassae FBgn0091690 I 0.803
GF15254 Drosophila ananassae FBgn0092279 I 0.803
GG24427 Drosophila erecta FBgn0116559 I 0.805
GG24967 Drosophila erecta FBgn0117096 I 0.803
GH13192 Drosophila grimshawi FBgn0120669 I 0.803
GH13710 Drosophila grimshawi FBgn0121186 I 0.803
GI17769 Drosophila mojavensis FBgn0140510 I 0.805
GI23940 Drosophila mojavensis FBgn0146665 I 0.803
GJ17594 Drosophila virilis FBgn0204764 I 0.805
GJ21213 Drosophila virilis FBgn0208346 I 0.803
GK14650 Drosophila willistoni FBgn0216656 I 0.803
GK15478 Drosophila willistoni FBgn0217483 I 0.805
GL18676 Drosophila persimilis FBgn0156277 I 0.803
GL19470 Drosophila persimilis FBgn0157069 I 0.805
GM18136 Drosophila sechellia FBgn0173043 I 0.805
GM18435 Drosophila sechellia FBgn0173342 I 0.803
ISCW005884 Ixodes scapularis ISCW005884 I 0.795
ISCW017921 Ixodes scapularis ISCW017921 I 0.795
KGM_20290 Danaus plexippus KGM_20290 I 0.803
L798_02529 Zootermopsis nevadensis L798_02529 I 0.793
L798_02536 Zootermopsis nevadensis L798_02536 I 0.803
LCUP002070 Lucilia cuprina LCUP002070 I 0.803
LCUP002077 Lucilia cuprina LCUP002077 I 0.803
MCINX006060 Melitaea cinxia MCINX006060 I 0.803
MDOA005526 Musca domestica MDOA005526 I 0.803
MDOA011451 Musca domestica MDOA011451 I 0.803
NV12185 Nasonia vitripennis NV12185 I 0.805
NV12189 Nasonia vitripennis NV12189 I 0.803
ODR1 Anopheles gambiae AGAP007973 I 0.803
ODR2 Anopheles gambiae AGAP008222 I 0.803
osr2 Oryzias latipes ENSORLG00000002797 I 0.799
OSR2 Ochotona princeps ENSOPRG00000005325 I 0.799
OSR2 Macaca mulatta ENSMMUG00000022185 I 0.799
OSR2 Microcebus murinus ENSMICG00000004390 I 0.799
Osr2 Dipodomys ordii ENSDORG00000011823 I 0.799
OSR2 Canis familiaris ENSCAFG00000000493 I 0.799
OSR2 Gorilla gorilla ENSGGOG00000006716 I 0.799
OSR2 Homo sapiens ENSG00000164920 D 0.799
OSR2 Erinaceus europaeus ENSEEUG00000008304 I 0.799
OSR2 Equus caballus ENSECAG00000017784 I 0.799
OSR2 Procavia capensis ENSPCAG00000003419 I 0.799
OSR2 Callithrix jacchus ENSCJAG00000015627 I 0.799
OSR2 Tursiops truncatus ENSTTRG00000007477 I 0.799
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.799
OSR2 Pteropus vampyrus ENSPVAG00000004363 I 0.799
OSR2 Pan troglodytes ENSPTRG00000020463 I 0.799
OSR2 Otolemur garnettii ENSOGAG00000007928 I 0.799
PHUM125070 Pediculus humanus PHUM125070 I 0.788
PHUM125080 Pediculus humanus PHUM125080 I 0.800
PHUM445550 Pediculus humanus PHUM445550 I 0.803
Sakowv30016612m.g Saccoglossus kowalevskii Sakowv30016612m.g I 0.797
SINV17987 Solenopsis invicta SINV17987 I 0.805
SINV18115 Solenopsis invicta SINV18115 I 0.803
SMAR002904 Strigamia maritima SMAR002904 I 0.786
SMAR005255 Strigamia maritima SMAR005255 I 0.800
sob Drosophila melanogaster FBgn0004892 D 0.805
SPU_024877 Strongylocentrotus purpuratus SPU_024877 I 0.796
TC005784 Tribolium castaneum TC005784 I 0.803
TC005788 Tribolium castaneum TC005788 I 0.803
tetur09g03230 Tetranychus urticae tetur09g03230 I 0.784
XP_002934454 Xenopus tropicalis XP_002934454 I 0.799
YQE_05719 Dendroctonus ponderosae YQE_05719 I 0.803