fgenesh1_pm.sca_14_chr10_3_0000034 (Nectria haematococca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh1_pm.sca_14_chr10_3_0000034 T139059_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FGRRES_01877
M01175_2.00 		Fusarium graminearum
NNNRGCTGNN
NNCAGCYNNN		 PBM
Lambert et al.(2019)
pTH10260 		0.827 1.000
NCU03699
M01878_2.00 		Neurospora crassa
NNVRGCTGDN
NHCAGCYBNN		 PBM
Weirauch et al.(2014)
pTH8956 		0.822 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.sca_14_chr10_3_0000034 C2H2 ZF 270 291
fgenesh1_pm.sca_14_chr10_3_0000034 C2H2 ZF 298 324
fgenesh1_pm.sca_14_chr10_3_0000034 C2H2 ZF 329 359
fgenesh1_pm.sca_14_chr10_3_0000034 C2H2 ZF 392 411

Links

Other C2H2 ZF family TFs
Other Nectria haematococca TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008552 Ricinus communis 30128.m008552 I 0.000
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.000
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.000
Bo4g043600 Brassica oleracea Bo4g043600 I 0.000
Bo4g182020 Brassica oleracea Bo4g182020 I 0.000
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.000
Bra005486 Brassica rapa Bra005486 I 0.000
Bra021860 Brassica rapa Bra021860 I 0.000
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.000
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.000
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.000
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.000
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.000
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.000
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.000
Cla001502 Citrullus lanatus Cla001502 I 0.000
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.000
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.000
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.000
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.000
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.000
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.000
MDP0000232058 Malus domestica MDP0000232058 I 0.000
mgf009760m Mimulus guttatus mgf009760m I 0.000
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.000
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.000
PK25885.1 Cannabis sativa PK25885.1 I 0.000
Pm024597 Prunus mume Pm024597 I 0.000
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.000
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.000
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.000
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.000
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.000
Si017674m.g Setaria italica Si017674m.g I 0.000
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.000
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.000
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.000
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.000