CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_136000067
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_136000067
T139164_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.774
0.904
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.774
0.904
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.774
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_136000067
C2H2 ZF
334
356
KSCEFCGKSFKFQSNLVVHRRSH
fgenesh2_pg.scaffold_136000067
C2H2 ZF
362
384
FKCNMCDHACTQASKLKRHMKTH
fgenesh2_pg.scaffold_136000067
C2H2 ZF
660
682
DTCEFCGKQFKNCSNLTVHRRSH
fgenesh2_pg.scaffold_136000067
C2H2 ZF
688
710
YKCEMCSYACAQSSKLTRHMKTH
fgenesh2_pg.scaffold_136000067
C2H2 ZF
718
741
YKCEICEMPFSVYGTMEKHMKKAH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy