fgenesh2_pg.scaffold_137000068 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_137000068 T139166_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN

NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.811 0.946
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS

STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.811 0.946
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR

YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.811 0.946
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.765 0.938
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.765 0.938
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.765 0.938
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.765 0.938
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.765 0.938
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.765 0.938
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_137000068 C2H2 ZF 456 481
fgenesh2_pg.scaffold_137000068 C2H2 ZF 489 516
fgenesh2_pg.scaffold_137000068 C2H2 ZF 541 561
fgenesh2_pg.scaffold_137000068 C2H2 ZF 567 592
fgenesh2_pg.scaffold_137000068 C2H2 ZF 598 623

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_pg.scaffold_169000072 Branchiostoma floridae fgenesh2_pg.scaffold_169000072 I 0.827
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.811
Gli3 Mus musculus ENSMUSG00000021318 D 0.811
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.811
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.811
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.809
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.809
gli1 Gasterosteus aculeatus ENSGACG00000006458 I 0.809
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.808
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.808
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.807
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.807
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.807
gli1 Oryzias latipes ENSORLG00000005455 I 0.807
gli1 Tetraodon nigroviridis ENSTNIG00000007058 I 0.806
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.806
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.806
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.806
gli2a Danio rerio ENSDARG00000025641 I 0.804
gli2.S Xenopus laevis XB-GENE-6251939 I 0.804
gli2.L Xenopus laevis XB-GENE-17342592 I 0.800
gli2b Takifugu rubripes ENSTRUG00000001954 I 0.799
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.799
gli3 Danio rerio ENSDARG00000052131 I 0.767
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.765
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.765
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.765
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.765
GLI3 Procavia capensis ENSPCAG00000015092 I 0.765
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.765
GLI3 Bos taurus ENSBTAG00000010671 I 0.765
GLI3 Equus caballus ENSECAG00000009281 I 0.765
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.765
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.765
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.765
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.765
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.765
Aan_R014715 Calypte anna Aan_R014715 I 0.765
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.765
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.765
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.765
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.765
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.765
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.765
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.765
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.765
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.765
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.765
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.765
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.765
GLI3 Homo sapiens ENSG00000106571 D 0.765
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.765
gli3.L Xenopus laevis XB-GENE-865509 I 0.765
GLI3 Felis catus ENSFCAG00000011989 I 0.765
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.765
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.765
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.765
XP_002933449 Xenopus tropicalis XP_002933449 I 0.765
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.765
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.765
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.765
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.765
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.765
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.765
XP_002933450 Xenopus tropicalis XP_002933450 I 0.765
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.765
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.765
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.765
GLI3 Canis familiaris ENSCAFG00000003535 I 0.765
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.765
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.765
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.765
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.765
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.765
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.763
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.763
gli2b Danio rerio ENSDARG00000020884 I 0.762
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.762
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.762
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.762
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.762
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.762
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.762
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.761
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.761
Tal_R009020 Tyto alba Tal_R009020 I 0.761
Tal_R006208 Tyto alba Tal_R006208 I 0.760
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.760
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.760
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.760
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.760
GLI2 Gallus gallus ENSGALG00000011630 I 0.760
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.760
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.760
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.760
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.760
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.760
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.760
Aan_R003640 Calypte anna Aan_R003640 I 0.760
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.760
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.759
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.759