CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_137000068
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_137000068
T139166_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN
NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.811
0.946
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS
STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.811
0.946
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR
YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.811
0.946
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.765
0.938
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.765
0.938
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.765
0.938
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.765
0.938
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.765
0.938
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.765
0.938
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_137000068
C2H2 ZF
456
481
TNCHWDGCSKEFDTQDQLVHHINNDH
fgenesh2_pg.scaffold_137000068
C2H2 ZF
489
516
FVCRWSECTREQKPFKAQYMLVVHMRRH
fgenesh2_pg.scaffold_137000068
C2H2 ZF
541
561
FEGCNKAYSRLENLKTHLRSH
fgenesh2_pg.scaffold_137000068
C2H2 ZF
567
592
YVCEHEGCNKAFSNASDRAKHQNRTH
fgenesh2_pg.scaffold_137000068
C2H2 ZF
598
623
YVCKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy