CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pm.scaffold_110000013
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pm.scaffold_110000013
T139733_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WT1
M00249_2.00
Homo sapiens
NCYCCCCCVNN
NNBGGGGGRGN
PBM
Barrera et al.(2016)
WT1_REF
0.758
0.804
WT1
M08937_2.00
Homo sapiens
YYYCBBYYCCTCCYYCNCBY
RVGNGRRGGAGGRRVVGRRR
Misc
Kulakovskiy et al.(2013)
WT1_HUMAN.H11MO.0.C
0.758
0.804
Wt1
M08968_2.00
Mus musculus
YYYCBBYYCCTCCYYCNCBY
RVGNGRRGGAGGRRVVGRRR
Misc
Kulakovskiy et al.(2013)
WT1_MOUSE.H11MO.0.B
0.758
0.804
Wt1
M10337_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WT1_02
0.758
0.804
WT1
M10290_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WT1_Q4
0.758
0.804
WT1
M10291_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WT1_Q6_01
0.758
0.804
WT1
M10292_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WT1_Q6_02
0.758
0.804
WT1
M10293_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WT1_Q6
0.758
0.804
WT1
M00244_2.00
Homo sapiens
NNNWAMWATATN
NATATWKTWNNN
PBM
Barrera et al.(2016)
WT1_H373Y
0.758
0.793
WT1
M00245_2.00
Homo sapiens
NNNNNNN
NNNNNNN
PBM
Barrera et al.(2016)
WT1_R366C
0.757
0.793
WT1
M00246_2.00
Homo sapiens
NNNNNNN
NNNNNNN
PBM
Barrera et al.(2016)
WT1_R366L
0.757
0.793
WT1
M00247_2.00
Homo sapiens
NWATATDAHNN
NNDTHATATWN
PBM
Barrera et al.(2016)
WT1_R394L
0.757
0.793
WT1
M00248_2.00
Homo sapiens
NNTATTWTATNNN
NNNATAWAATANN
PBM
Barrera et al.(2016)
WT1_R394W
0.757
0.793
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.scaffold_110000013
C2H2 ZF
8
32
FVCPYPACNKRYFKLSHLQMHNRKH
fgenesh2_pm.scaffold_110000013
C2H2 ZF
38
62
FLCEYTGCGRRFSRSDQLKRHIRKH
fgenesh2_pm.scaffold_110000013
C2H2 ZF
68
90
FSCETCGRKFSRSDHLKTHTRTH
fgenesh2_pm.scaffold_110000013
C2H2 ZF
96
120
FCCRWPNCLKRFARSDELVRHHNMH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_pg.scaffold_80000039
Branchiostoma floridae
fgenesh2_pg.scaffold_80000039
I
0.827
ENSGMOG00000012296
Gadus morhua
ENSGMOG00000012296
I
0.778
wt1b
Danio rerio
ENSDARG00000007990
I
0.770
ENSONIG00000005545
Oreochromis niloticus
ENSONIG00000005545
I
0.770
wt1b
Gasterosteus aculeatus
ENSGACG00000016020
I
0.770
wt1
Oryzias latipes
ENSORLG00000009859
I
0.768
ENSONIG00000011043
Oreochromis niloticus
ENSONIG00000011043
I
0.766
wt1
Oryzias latipes
ENSORLG00000012424
I
0.766
ENSLOCG00000004537
Lepisosteus oculatus
ENSLOCG00000004537
I
0.763
ENSPFOG00000010572
Poecilia formosa
ENSPFOG00000010572
I
0.763
ENSXMAG00000005139
Xiphophorus maculatus
ENSXMAG00000005139
I
0.763
ENSAMXG00000013017
Astyanax mexicanus
ENSAMXG00000013017
I
0.763
wt1a
Danio rerio
ENSDARG00000031420
I
0.763
ENSLACG00000016378
Latimeria chalumnae
ENSLACG00000016378
I
0.761
ENSPPYG00000029822
Pongo abelii
ENSPPYG00000029822
I
0.758
ENSPMAG00000008950
Petromyzon marinus
ENSPMAG00000008950
I
0.758
ENSPSIG00000013679
Pelodiscus sinensis
ENSPSIG00000013679
I
0.758
Wt1
Rattus norvegicus
ENSRNOG00000013074
I
0.758
WT1
Pan troglodytes
ENSPTRG00000003476
I
0.758
wt1.L
Xenopus laevis
XB-GENE-6252376
I
0.758
WT1
Procavia capensis
ENSPCAG00000002213
I
0.758
wt1.S
Xenopus laevis
XB-GENE-864792
I
0.758
B5DE03
Xenopus tropicalis
B5DE03
I
0.758
wt1
Xenopus tropicalis
XB-GENE-484999
I
0.758
Pvit_09510
Pogona vitticeps
Pvit_09510
I
0.758
ENSPANG00000019482
Papio anubis
ENSPANG00000019482
I
0.758
ENSSARG00000000207
Sorex araneus
ENSSARG00000000207
I
0.758
ENSSHAG00000017390
Sarcophilus harrisii
ENSSHAG00000017390
I
0.758
Gfo_R001970
Geospiza fortis
Gfo_R001970
I
0.758
ENSVPAG00000007788
Vicugna pacos
ENSVPAG00000007788
I
0.758
Aan_R006616
Calypte anna
Aan_R006616
I
0.758
Afo_R014628
Aptenodytes forsteri
Afo_R014628
I
0.758
Alligator_sinensis_CCG012951.1
Alligator sinensis
Alligator_sinensis_CCG012951.1
I
0.758
ENSOPRG00000015709
Ochotona princeps
ENSOPRG00000015709
I
0.758
WT1
Taeniopygia guttata
ENSTGUG00000004906
I
0.758
ENSP00000331327
Macaca fascicularis
ENSP00000331327
I
0.758
WT1
Sus scrofa
ENSSSCG00000013316
I
0.758
B7ZSG3
Xenopus laevis
B7ZSG3
I
0.758
ENSSTOG00000023716
Ictidomys tridecemlineatus
ENSSTOG00000023716
I
0.758
ENSP00000331327-D1
Bos grunniens
ENSP00000331327-D1
I
0.758
WT1
Oryctolagus cuniculus
ENSOCUG00000005882
I
0.758
ENSECAG00000022308
Equus caballus
ENSECAG00000022308
I
0.758
Wt1
Dipodomys ordii
ENSDORG00000013725
I
0.758
ENSEEUG00000007221
Erinaceus europaeus
ENSEEUG00000007221
I
0.758
WT1
Echinops telfairi
ENSETEG00000000684
I
0.758
WT1
Felis catus
ENSFCAG00000000308
I
0.758
ENSFALG00000010820
Ficedula albicollis
ENSFALG00000010820
I
0.758
WT1
Dasypus novemcinctus
ENSDNOG00000003652
I
0.758
ENSCSAG00000005257
Chlorocebus sabaeus
ENSCSAG00000005257
I
0.758
ENSAPLG00000005775
Anas platyrhynchos
ENSAPLG00000005775
I
0.758
ENSAMEG00000006957
Ailuropoda melanoleuca
ENSAMEG00000006957
I
0.758
WT1
Bos taurus
ENSBTAG00000047268
I
0.758
WT1
Canis familiaris
ENSCAFG00000007426
I
0.758
WT1
Callithrix jacchus
ENSCJAG00000005900
I
0.758
WT1
Choloepus hoffmanni
ENSCHOG00000006244
I
0.758
WT1
Homo sapiens
ENSG00000184937
D
0.758
WT1
Gallus gallus
ENSGALG00000012115
I
0.758
Wt1
Mus musculus
ENSMUSG00000016458
D
0.758
ENSMPUG00000011307
Mustela putorius furo
ENSMPUG00000011307
I
0.758
ENSNLEG00000017890
Nomascus leucogenys
ENSNLEG00000017890
I
0.758
ENSOANG00000015147
Ornithorhynchus anatinus
ENSOANG00000015147
I
0.758
ENSACAG00000002480
Anolis carolinensis
ENSACAG00000002480
I
0.758
ENSOARG00000016334
Ovis aries
ENSOARG00000016334
I
0.758
WT1
Monodelphis domestica
ENSMODG00000009646
I
0.758
WT1
Macaca mulatta
ENSMMUG00000009881
I
0.758
ENSMGAG00000001489
Meleagris gallopavo
ENSMGAG00000001489
I
0.758
WT1
Loxodonta africana
ENSLAFG00000006160
I
0.758
WT1
Otolemur garnettii
ENSOGAG00000007118
I
0.758
WT1
Microcebus murinus
ENSMICG00000004097
I
0.758
WT1
Myotis lucifugus
ENSMLUG00000027523
I
0.758
WT1
Gorilla gorilla
ENSGGOG00000011586
I
0.758
wt1b
Takifugu rubripes
ENSTRUG00000006559
I
0.756
ENSPFOG00000017089
Poecilia formosa
ENSPFOG00000017089
N
0.755