Ocbimv22030200m.g (Octopus bimaculoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ocbimv22030200m.g T141750_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gl
M03671_2.00
Drosophila melanogaster
RTTACCATACAAGTGCAV

BTGCACTTGTATGGTAAY
SELEX
Nitta et al.(2015)
gl_1
0.816 0.912
gl
M06078_2.00
Drosophila melanogaster
DAYNCWTBAAAT

ATTTVAWGNRTH
B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618
0.816 0.912
gl
M06079_2.00
Drosophila melanogaster
TTRTABGGYTTC

GAARCCVTAYAA
B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618
0.816 0.912
gl
M06080_2.00
Drosophila melanogaster
NNBDWNTADGGCTTC

GAAGCCHTANWHVNN
B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618
0.816 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22030200m.p C2H2 ZF 338 359
Ocbimv22030200m.p C2H2 ZF 365 387
Ocbimv22030200m.p C2H2 ZF 393 415
Ocbimv22030200m.p C2H2 ZF 421 443
Ocbimv22030200m.p C2H2 ZF 449 471

Links

Other C2H2 ZF family TFs
Other Octopus bimaculoides TFs

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47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action