CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22030200m.g
(
Octopus bimaculoides
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Ocbimv22030200m.g
T141750_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gl
M03671_2.00
Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY
SELEX
Nitta et al.(2015)
gl_1
0.816
0.912
gl
M06078_2.00
Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH
B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618
0.816
0.912
gl
M06079_2.00
Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA
B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618
0.816
0.912
gl
M06080_2.00
Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN
B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618
0.816
0.912
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22030200m.p
C2H2 ZF
338
359
LCRICGKTYARPSTLKTHMRTH
Ocbimv22030200m.p
C2H2 ZF
365
387
YRCSTCSKSFSQAANLTAHIRTH
Ocbimv22030200m.p
C2H2 ZF
393
415
FRCPICDRRFSQSSSVTTHMRTH
Ocbimv22030200m.p
C2H2 ZF
421
443
YRCRMCKKAFSDSSTLTKHVRIH
Ocbimv22030200m.p
C2H2 ZF
449
471
YQCKLCLLRFSQSGNLNRHMRVH
Links
Other
C2H2 ZF
family TFs
Other
Octopus bimaculoides
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy