CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30000725m.g
(
Saccoglossus kowalevskii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sakowv30000725m.g
T142177_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.812
0.928
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.812
0.928
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.810
0.928
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.810
0.928
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.810
0.928
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23940514_peptide
C2H2 ZF
282
304
FTCTECGKVFNAHYNLTRHMPVH
23940514_peptide
C2H2 ZF
310
332
FVCKICGKGFRQASTLCRHKIIH
23940514_peptide
C2H2 ZF
338
360
HKCKTCGKAFNRSSTLNTHLRIH
23940514_peptide
C2H2 ZF
366
388
FVCEYCGKGFHQKGNYKNHKLTH
23940514_peptide
C2H2 ZF
394
416
YKCNICNKAFHQVYNLTFHMHTH
23940514_peptide
C2H2 ZF
422
445
FTCSICGKGFCRNFDLKKHVRKLH
Links
Other
C2H2 ZF
family TFs
Other
Saccoglossus kowalevskii
TFs
171 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy