CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30008117m.g
(
Saccoglossus kowalevskii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sakowv30008117m.g
T142226_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gl
M03671_2.00
Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY
SELEX
Nitta et al.(2015)
gl_1
0.797
0.877
gl
M06078_2.00
Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH
B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618
0.797
0.877
gl
M06079_2.00
Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA
B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618
0.797
0.877
gl
M06080_2.00
Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN
B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618
0.797
0.877
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23959626_peptide
C2H2 ZF
72
93
LCRLCGKTYARPSTLKTHLRTH
23959626_peptide
C2H2 ZF
99
121
YRCSTCDKAFSQAANLTAHVRTH
23959626_peptide
C2H2 ZF
127
149
FKCMICHRSFSQSSSVTTHMRTH
23959626_peptide
C2H2 ZF
155
177
YKCALCKKAFADSSTLTKHLRIH
23959626_peptide
C2H2 ZF
183
205
YQCKLCMLRFSQSGNLNRHMRVH
Links
Other
C2H2 ZF
family TFs
Other
Saccoglossus kowalevskii
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy