Sakowv30015302m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30015302m.g T142274_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.770 0.848
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.767 0.841
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.767 0.841
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.767 0.841
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.767 0.841
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.767 0.841
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.767 0.841
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.767 0.841
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.767 0.841
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.765 0.833
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.756 0.812
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.756 0.812
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.756 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23923054_peptide C2H2 ZF 249 272
23923054_peptide C2H2 ZF 278 300
23923054_peptide C2H2 ZF 306 328
23923054_peptide C2H2 ZF 334 356
23923054_peptide C2H2 ZF 362 384
23923054_peptide C2H2 ZF 390 413

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.794
LotgiG83709 Lottia gigantea LotgiG83709 I 0.780
CapteG45287 Capitella teleta CapteG45287 I 0.778
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.776
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.772
GM16223 Drosophila sechellia FBgn0171139 I 0.770
GI23984 Drosophila mojavensis FBgn0146708 I 0.770
GL26188 Drosophila persimilis FBgn0163770 I 0.770
GG10437 Drosophila erecta FBgn0102746 I 0.770
sens-2 Drosophila melanogaster FBgn0051632 D 0.770
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.770
GJ21268 Drosophila virilis FBgn0208401 I 0.770
GH13715 Drosophila grimshawi FBgn0121191 I 0.770
GF15430 Drosophila ananassae FBgn0092455 I 0.770
MDOA011065 Musca domestica MDOA011065 I 0.770
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.770
GE14143 Drosophila yakuba FBgn0231766 I 0.770
GK24242 Drosophila willistoni FBgn0226203 I 0.770
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.768
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.768
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.768
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.768
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.768
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.767
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.767
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.767
Gfi1 Mus musculus ENSMUSG00000029275 D 0.767
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.767
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.767
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.767
GFI1 Sus scrofa ENSSSCG00000006902 I 0.767
Tal_R006464 Tyto alba Tal_R006464 I 0.767
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.767
Aan_R000889 Calypte anna Aan_R000889 I 0.767
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.767
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.767
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.767
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.767
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.767
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.767
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.767
GFI1 Canis familiaris ENSCAFG00000020155 I 0.767
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.767
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.767
GFI1 Bos taurus ENSBTAG00000016723 I 0.767
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.767
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.767
GFI1 Homo sapiens ENSG00000162676 D 0.767
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.767
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.767
gfi1aa Danio rerio ENSDARG00000020746 I 0.767
GFI1 Equus caballus ENSECAG00000006647 I 0.767
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.767
GFI1 Felis catus ENSFCAG00000005914 I 0.767
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.767
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.767
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.767
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.767
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.767
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.767
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.767
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.767
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.767
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.766
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.765
gfi1ab Danio rerio ENSDARG00000044457 I 0.765
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.765
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.765
GFI1B Bos taurus ENSBTAG00000012772 I 0.764
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.764
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.764
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.763
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.763
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.762
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.761
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.761
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.761
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.760
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.760
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.760
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.759
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.759
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.759
GFI1B Gallus gallus ENSGALG00000003478 I 0.759
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.759
Aan_R008865 Calypte anna Aan_R008865 I 0.759
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.759
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.759
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.759
Tal_R001363 Tyto alba Tal_R001363 I 0.757
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.757
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.757
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.757
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.757
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.757
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.757
LotgiG129344 Lottia gigantea LotgiG129344 I 0.757
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.757
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.757
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.756
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.756
Gfi1b Mus musculus ENSMUSG00000026815 D 0.756
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.756