Sakowv30026316m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30026316m.g T142361_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.820 0.930
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.820 0.930
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.803 0.904
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.803 0.904
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.803 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23915759_peptide C2H2 ZF 461 482
23915759_peptide C2H2 ZF 488 510
23915759_peptide C2H2 ZF 805 827
23915759_peptide C2H2 ZF 833 855
23915759_peptide C2H2 ZF 863 886
23915760_peptide C2H2 ZF 460 481
23915760_peptide C2H2 ZF 487 509
23915760_peptide C2H2 ZF 804 826
23915760_peptide C2H2 ZF 832 854
23915760_peptide C2H2 ZF 862 885
23915761_peptide C2H2 ZF 415 436
23915761_peptide C2H2 ZF 442 464
23915761_peptide C2H2 ZF 759 781
23915761_peptide C2H2 ZF 787 809
23915761_peptide C2H2 ZF 817 840

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

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130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action