Sakowv30031703m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30031703m.g T142405_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mtf1
M00136_2.00 		Mus musculus
CGTGYGCAM
KTGCRCACG		 PBM
Badis et al.(2009)
Mtf1_2377 		0.771 0.797
MTF1
M02922_2.00 		Homo sapiens
GTGCCGTGTGCAAA
TTTGCACACGGCAC		 SELEX
Jolma et al.(2013)
MTF1_1 		0.771 0.797
MTF1
M04617_2.00 		Homo sapiens
NDNDYCGTGTGCAAARN
NYTTTGCACACGRHNHN		 SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX 		0.771 0.797
MTF1
M08942_2.00 		Homo sapiens
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C 		0.771 0.797
Mtf1
M08981_2.00 		Mus musculus
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C 		0.771 0.797
MTF1
M10308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_01 		0.771 0.797
MTF1
M10309_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_02 		0.771 0.797
MTF1
M10310_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q4 		0.771 0.797
MTF1
M10311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q5 		0.771 0.797
MTF1
M04618_2.00 		Homo sapiens
NRNRCCGTGTGCAAARV
BYTTTGCACACGGYNYN		 SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX 		0.771 0.797
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23942103_peptide C2H2 ZF 524 548
23942103_peptide C2H2 ZF 554 578
23942103_peptide C2H2 ZF 584 608
23942103_peptide C2H2 ZF 613 637
23942103_peptide C2H2 ZF 643 667
23942103_peptide C2H2 ZF 673 697

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

Invalid Input OrderBy

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action