Sakowv30044960m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30044960m.g T142510_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN

NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.783 0.857
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT

ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.783 0.857
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY

RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.783 0.857
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN

NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.783 0.857
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.779 0.870
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG

CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.779 0.863
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG

CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.779 0.863
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.779 0.863
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH

DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.779 0.863
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB

VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.779 0.863
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV

BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.779 0.863
ZNF143
M10249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.779 0.863
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23920362_peptide C2H2 ZF 251 275
23920362_peptide C2H2 ZF 281 305
23920362_peptide C2H2 ZF 311 335
23920362_peptide C2H2 ZF 341 365
23920362_peptide C2H2 ZF 371 395
23920362_peptide C2H2 ZF 401 425
23920362_peptide C2H2 ZF 431 454
23920363_peptide C2H2 ZF 251 275
23920363_peptide C2H2 ZF 281 305
23920363_peptide C2H2 ZF 311 335
23920363_peptide C2H2 ZF 341 365
23920363_peptide C2H2 ZF 371 395
23920363_peptide C2H2 ZF 401 425
23920363_peptide C2H2 ZF 431 454
23920364_peptide C2H2 ZF 251 275
23920364_peptide C2H2 ZF 281 305
23920364_peptide C2H2 ZF 311 335
23920364_peptide C2H2 ZF 341 365
23920364_peptide C2H2 ZF 371 395
23920364_peptide C2H2 ZF 401 425
23920364_peptide C2H2 ZF 431 454

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAH73068 Xenopus laevis AAH73068 I 0.778
Aan_R006576 Calypte anna Aan_R006576 I 0.779
Afo_R002092 Aptenodytes forsteri Afo_R002092 I 0.784
Afo_R014591 Aptenodytes forsteri Afo_R014591 I 0.779
Alligator_sinensis_CCG018668.1 Alligator sinensis Alligator_sinensis_CCG018668.1 I 0.779
Alligator_sinensis_CCG020455.1 Alligator sinensis Alligator_sinensis_CCG020455.1 I 0.784
BGLB001048 Biomphalaria glabrata BGLB001048 I 0.769
Brh_R005520 Buceros rhinoceros Brh_R005520 I 0.779
Cmyd_10011173 Chelonia mydas Cmyd_10011173 I 0.784
ZNF143 Anolis carolinensis ENSACAG00000009338 I 0.779
ENSAMEG00000000752 Ailuropoda melanoleuca ENSAMEG00000000752 I 0.783
ENSAMEG00000003872 Ailuropoda melanoleuca ENSAMEG00000003872 I 0.779
ENSAMXG00000003833 Astyanax mexicanus ENSAMXG00000003833 I 0.775
ENSAMXG00000008869 Astyanax mexicanus ENSAMXG00000008869 I 0.778
ENSAPLG00000002385 Anas platyrhynchos ENSAPLG00000002385 I 0.779
ENSAPLG00000005226 Anas platyrhynchos ENSAPLG00000005226 I 0.769
ZNF76 Bos taurus ENSBTAG00000006170 I 0.783
ENSBTAP00000008112-D1 Bos grunniens ENSBTAP00000008112-D1 I 0.783
ZNF76 Canis familiaris ENSCAFG00000001304 I 0.783
ZNF143 Canis familiaris ENSCAFG00000007373 I 0.779
ZNF76 Choloepus hoffmanni ENSCHOG00000003197 I 0.783
ZNF143 Callithrix jacchus ENSCJAG00000011327 I 0.779
ZNF76 Callithrix jacchus ENSCJAG00000015519 I 0.783
ZNF143 Cavia porcellus ENSCPOG00000003109 I 0.779
ZNF76 Cavia porcellus ENSCPOG00000007381 I 0.783
ENSCSAG00000004520 Chlorocebus sabaeus ENSCSAG00000004520 I 0.774
ENSCSAG00000009955 Chlorocebus sabaeus ENSCSAG00000009955 I 0.783
znf76 Danio rerio ENSDARG00000013279 I 0.785
znf143b Danio rerio ENSDARG00000041581 I 0.776
ZNF76 Dasypus novemcinctus ENSDNOG00000015856 I 0.783
ZNF76 Equus caballus ENSECAG00000014843 I 0.783
ZNF143 Equus caballus ENSECAG00000018889 I 0.779
ZNF143 Erinaceus europaeus ENSEEUG00000000955 I 0.779
ENSFALG00000000985 Ficedula albicollis ENSFALG00000000985 I 0.779
ENSFALG00000003698 Ficedula albicollis ENSFALG00000003698 I 0.785
ZNF143 Felis catus ENSFCAG00000002342 I 0.779
ZNF76 Felis catus ENSFCAG00000005893 I 0.783
ZNF76 Homo sapiens ENSG00000065029 D 0.783
ZNF143 Homo sapiens ENSG00000166478 D 0.779
znf143b Gasterosteus aculeatus ENSGACG00000009776 I 0.776
ZNF143 Gallus gallus ENSGALG00000005787 I 0.779
ZNF76 Gorilla gorilla ENSGGOG00000014188 I 0.783
ENSGMOG00000001888 Gadus morhua ENSGMOG00000001888 I 0.778
ENSLACG00000017669 Latimeria chalumnae ENSLACG00000017669 I 0.778
ZNF143 Loxodonta africana ENSLAFG00000004487 I 0.779
ZNF76 Loxodonta africana ENSLAFG00000026071 I 0.783
ENSLOCG00000003619 Lepisosteus oculatus ENSLOCG00000003619 I 0.778
ENSLOCG00000011655 Lepisosteus oculatus ENSLOCG00000011655 I 0.796
ENSMEUG00000003014 Macropus eugenii ENSMEUG00000003014 I 0.779
ZNF143 Meleagris gallopavo ENSMGAG00000006206 I 0.779
ZNF143 Microcebus murinus ENSMICG00000004353 I 0.779
ZNF143 Myotis lucifugus ENSMLUG00000000213 I 0.778
ZNF76 Myotis lucifugus ENSMLUG00000008610 I 0.783
ZNF143 Macaca mulatta ENSMMUG00000008758 I 0.779
ZNF76 Macaca mulatta ENSMMUG00000023559 I 0.783
ZNF143 Monodelphis domestica ENSMODG00000007909 I 0.779
ZNF76 Monodelphis domestica ENSMODG00000013806 I 0.783
ENSMPUG00000003522 Mustela putorius furo ENSMPUG00000003522 I 0.783
ENSMPUG00000012796 Mustela putorius furo ENSMPUG00000012796 I 0.779
Zfp523 Mus musculus ENSMUSG00000024220 I 0.783
Zfp143 Mus musculus ENSMUSG00000061079 D 0.779
ZNF143 Ornithorhynchus anatinus ENSOANG00000005853 I 0.777
ENSOARG00000012477 Ovis aries ENSOARG00000012477 I 0.779
ZNF143 Oryctolagus cuniculus ENSOCUG00000005226 I 0.779
ZNF76 Oryctolagus cuniculus ENSOCUG00000015630 I 0.783
ZNF76 Otolemur garnettii ENSOGAG00000002935 I 0.782
ZNF143 Otolemur garnettii ENSOGAG00000011518 I 0.779
ENSONIG00000015524 Oreochromis niloticus ENSONIG00000015524 I 0.775
ZNF143 Ochotona princeps ENSOPRG00000005466 I 0.779
ENSOPRG00000009136 Ochotona princeps ENSOPRG00000009136 I 0.783
znf143b Oryzias latipes ENSORLG00000001130 I 0.769
ENSP00000363064 Macaca fascicularis ENSP00000363064 I 0.783
ENSP00000379847 Macaca fascicularis ENSP00000379847 I 0.779
ENSP00000379847-D1 Bos grunniens ENSP00000379847-D1 I 0.779
ENSPANG00000002501 Papio anubis ENSPANG00000002501 I 0.779
ENSPANG00000021154 Papio anubis ENSPANG00000021154 I 0.783
ENSPFOG00000008911 Poecilia formosa ENSPFOG00000008911 I 0.778
ENSPPYG00000003495 Pongo abelii ENSPPYG00000003495 I 0.779
ENSPPYG00000016525 Pongo abelii ENSPPYG00000016525 I 0.783
ENSPSIG00000005652 Pelodiscus sinensis ENSPSIG00000005652 I 0.784
ENSPSIG00000009683 Pelodiscus sinensis ENSPSIG00000009683 I 0.779
ZNF143 Pan troglodytes ENSPTRG00000003349 I 0.779
ZNF76 Pan troglodytes ENSPTRG00000018080 I 0.783
ZNF76 Pteropus vampyrus ENSPVAG00000008041 I 0.783
Zfp523 Rattus norvegicus ENSRNOG00000000501 I 0.783
Zfp143 Rattus norvegicus ENSRNOG00000010087 I 0.779
ZNF143 Sorex araneus ENSSARG00000007780 I 0.779
ENSSHAG00000009934 Sarcophilus harrisii ENSSHAG00000009934 I 0.783
ZNF76 Sus scrofa ENSSSCG00000001537 I 0.783
ENSSTOG00000000256 Ictidomys tridecemlineatus ENSSTOG00000000256 I 0.783
ENSSTOG00000009647 Ictidomys tridecemlineatus ENSSTOG00000009647 I 0.773
ZNF76 Taeniopygia guttata ENSTGUG00000001745 I 0.785
ENSTGUG00000008153 Taeniopygia guttata ENSTGUG00000008153 I 0.779
znf143b Tetraodon nigroviridis ENSTNIG00000013739 I 0.776
znf143 Takifugu rubripes ENSTRUG00000009324 I 0.776
ENSTSYG00000004324 Tarsius syrichta ENSTSYG00000004324 I 0.779
ZNF76 Tursiops truncatus ENSTTRG00000009380 I 0.783
ZNF143 Tursiops truncatus ENSTTRG00000015353 I 0.779
ENSXMAG00000005152 Xiphophorus maculatus ENSXMAG00000005152 I 0.778
estExt_fgenesh2_pg.C_1970081 Branchiostoma floridae estExt_fgenesh2_pg.C_1970081 I 0.794
Gfo_R002960 Geospiza fortis Gfo_R002960 I 0.785
Gfo_R011843 Geospiza fortis Gfo_R011843 I 0.779
LotgiG222832 Lottia gigantea LotgiG222832 I 0.790
Myotis_brandtii_ZNF143_10021171 Myotis brandtii Myotis_brandtii_ZNF143_10021171 I 0.775
Myotis_brandtii_ZNF76_10017771 Myotis brandtii Myotis_brandtii_ZNF76_10017771 I 0.783
Ocbimv22038914m.g Octopus bimaculoides Ocbimv22038914m.g I 0.794
Ogr18895 Ophisaurus gracilis Ogr18895 I 0.775
Pvit_03784 Pogona vitticeps Pvit_03784 I 0.779
Sakowv30036637m.g Saccoglossus kowalevskii Sakowv30036637m.g I 0.827
SMAR015659 Strigamia maritima SMAR015659 I 0.800
Tal_R001092 Tyto alba Tal_R001092 I 0.779
Tal_R002540 Tyto alba Tal_R002540 I 0.783
znf143 Xenopus tropicalis XB-GENE-1012504 I 0.778
znf143.S Xenopus laevis XB-GENE-1012509 I 0.776