Sakowv30044960m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30044960m.g T142510_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN

NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.783 0.857
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT

ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.783 0.857
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY

RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.783 0.857
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN

NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.783 0.857
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.779 0.870
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG

CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.779 0.863
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG

CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.779 0.863
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.779 0.863
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH

DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.779 0.863
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB

VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.779 0.863
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV

BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.779 0.863
ZNF143
M10249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.779 0.863
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23920362_peptide C2H2 ZF 251 275
23920362_peptide C2H2 ZF 281 305
23920362_peptide C2H2 ZF 311 335
23920362_peptide C2H2 ZF 341 365
23920362_peptide C2H2 ZF 371 395
23920362_peptide C2H2 ZF 401 425
23920362_peptide C2H2 ZF 431 454
23920363_peptide C2H2 ZF 251 275
23920363_peptide C2H2 ZF 281 305
23920363_peptide C2H2 ZF 311 335
23920363_peptide C2H2 ZF 341 365
23920363_peptide C2H2 ZF 371 395
23920363_peptide C2H2 ZF 401 425
23920363_peptide C2H2 ZF 431 454
23920364_peptide C2H2 ZF 251 275
23920364_peptide C2H2 ZF 281 305
23920364_peptide C2H2 ZF 311 335
23920364_peptide C2H2 ZF 341 365
23920364_peptide C2H2 ZF 371 395
23920364_peptide C2H2 ZF 401 425
23920364_peptide C2H2 ZF 431 454

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo6g039630 Brassica oleracea Bo6g039630 N 0.000
Bostr.0124s0040 Boechera stricta Bostr.0124s0040 N 0.000
Cagra.4237s0016 Capsella grandiflora Cagra.4237s0016 N 0.000
Carubv10008456m.g Capsella rubella Carubv10008456m.g N 0.000
cassava6719.valid.m1 Manihot esculenta cassava6719.valid.m1 N 0.000
Ca_07960 Cicer arietinum Ca_07960 N 0.000
chr6.CM0066.220.nc Lotus japonicus chr6.CM0066.220.nc N 0.000
Ciclev10027619m.g Citrus clementina Ciclev10027619m.g N 0.000
Cucsa.105540 Cucumis sativus Cucsa.105540 N 0.000
Eucgr.J03078 Eucalyptus grandis Eucgr.J03078 N 0.000
evm.TU.supercontig_167.15 Carica papaya evm.TU.supercontig_167.15 N 0.000
FRS6 Arabidopsis thaliana AT1G52520 N 0.000
FRS6 Vitis vinifera VIT_09s0002g07400 N 0.000
FRS6 Populus trichocarpa POPTR_0003s02570 N 0.000
gene15714-v1.0-hybrid Fragaria vesca gene15714-v1.0-hybrid N 0.000
GLYMA09G02250 Glycine max GLYMA09G02250 N 0.000
GLYMA15G13150 Glycine max GLYMA15G13150 N 0.000
Gorai.006G101600 Gossypium raimondii Gorai.006G101600 N 0.000
Gorai.011G085000 Gossypium raimondii Gorai.011G085000 N 0.000
mg017777m Mimulus guttatus mg017777m N 0.000
PK01244.1 Cannabis sativa PK01244.1 N 0.000
Pm013706 Prunus mume Pm013706 N 0.000
PRUPE_ppa002952mg Prunus persica PRUPE_ppa002952mg N 0.000
SapurV1A.0199s0230 Salix purpurea SapurV1A.0199s0230 N 0.000
Solyc03g117520.1 Solanum lycopersicum Solyc03g117520.1 N 0.000
TCM_027271 Theobroma cacao TCM_027271 N 0.000
Thhalv10011274m.g Eutrema salsugineum Thhalv10011274m.g N 0.000