CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30044960m.g
(
Saccoglossus kowalevskii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sakowv30044960m.g
T142510_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.783
0.857
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.783
0.857
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.783
0.857
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.783
0.857
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.779
0.870
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.779
0.863
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.779
0.863
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.779
0.863
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.779
0.863
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.779
0.863
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.779
0.863
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.779
0.863
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23920362_peptide
C2H2 ZF
251
275
FRCGHDGCGRMYTTAHHLKVHERAH
23920362_peptide
C2H2 ZF
281
305
YKCEHPGCGKAFATGYGLKSHTRVH
23920362_peptide
C2H2 ZF
311
335
YKCPEESCQKSFKTSGDLQKHVRTH
23920362_peptide
C2H2 ZF
341
365
FKCPFEGCDRAFTTSNIRKVHIRTH
23920362_peptide
C2H2 ZF
371
395
YICREDGCGRAFASATNYKNHMRIH
23920362_peptide
C2H2 ZF
401
425
YVCTVAGCGKRFTEYSSLYKHHVVH
23920362_peptide
C2H2 ZF
431
454
YICNHCGKTYRQTSTLAMHKRTAH
23920363_peptide
C2H2 ZF
251
275
FRCGHDGCGRMYTTAHHLKVHERAH
23920363_peptide
C2H2 ZF
281
305
YKCEHPGCGKAFATGYGLKSHTRVH
23920363_peptide
C2H2 ZF
311
335
YKCPEESCQKSFKTSGDLQKHVRTH
23920363_peptide
C2H2 ZF
341
365
FKCPFEGCDRAFTTSNIRKVHIRTH
23920363_peptide
C2H2 ZF
371
395
YICREDGCGRAFASATNYKNHMRIH
23920363_peptide
C2H2 ZF
401
425
YVCTVAGCGKRFTEYSSLYKHHVVH
23920363_peptide
C2H2 ZF
431
454
YICNHCGKTYRQTSTLAMHKRTAH
23920364_peptide
C2H2 ZF
251
275
FRCGHDGCGRMYTTAHHLKVHERAH
23920364_peptide
C2H2 ZF
281
305
YKCEHPGCGKAFATGYGLKSHTRVH
23920364_peptide
C2H2 ZF
311
335
YKCPEESCQKSFKTSGDLQKHVRTH
23920364_peptide
C2H2 ZF
341
365
FKCPFEGCDRAFTTSNIRKVHIRTH
23920364_peptide
C2H2 ZF
371
395
YICREDGCGRAFASATNYKNHMRIH
23920364_peptide
C2H2 ZF
401
425
YVCTVAGCGKRFTEYSSLYKHHVVH
23920364_peptide
C2H2 ZF
431
454
YICNHCGKTYRQTSTLAMHKRTAH
Links
Other
C2H2 ZF
family TFs
Other
Saccoglossus kowalevskii
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy