Sakowv30044960m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30044960m.g T142510_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN

NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.783 0.857
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT

ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.783 0.857
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY

RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.783 0.857
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN

NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.783 0.857
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.779 0.870
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG

CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.779 0.863
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG

CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.779 0.863
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH

DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.779 0.863
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH

DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.779 0.863
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB

VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.779 0.863
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV

BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.779 0.863
ZNF143
M10249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.779 0.863
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23920362_peptide C2H2 ZF 251 275
23920362_peptide C2H2 ZF 281 305
23920362_peptide C2H2 ZF 311 335
23920362_peptide C2H2 ZF 341 365
23920362_peptide C2H2 ZF 371 395
23920362_peptide C2H2 ZF 401 425
23920362_peptide C2H2 ZF 431 454
23920363_peptide C2H2 ZF 251 275
23920363_peptide C2H2 ZF 281 305
23920363_peptide C2H2 ZF 311 335
23920363_peptide C2H2 ZF 341 365
23920363_peptide C2H2 ZF 371 395
23920363_peptide C2H2 ZF 401 425
23920363_peptide C2H2 ZF 431 454
23920364_peptide C2H2 ZF 251 275
23920364_peptide C2H2 ZF 281 305
23920364_peptide C2H2 ZF 311 335
23920364_peptide C2H2 ZF 341 365
23920364_peptide C2H2 ZF 371 395
23920364_peptide C2H2 ZF 401 425
23920364_peptide C2H2 ZF 431 454

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL009250 Aedes aegypti AAEL009250 N 0.000
AALB007799 Anopheles albimanus AALB007799 N 0.000
AARA001129 Anopheles arabiensis AARA001129 N 0.000
ACHR006844 Anopheles christyi ACHR006844 N 0.000
ACOM032715 Anopheles coluzzii ACOM032715 N 0.000
ACUA017218 Anopheles culicifacies ACUA017218 N 0.000
ADAC006275 Anopheles darlingi ADAC006275 N 0.000
ADIR001058 Anopheles dirus ADIR001058 N 0.000
AEPI007285 Anopheles epiroticus AEPI007285 N 0.000
AFAF011369 Anopheles farauti AFAF011369 N 0.000
AFUN004692 Anopheles funestus AFUN004692 N 0.000
AGAP012954 Anopheles gambiae AGAP012954 N 0.000
AMEC019196 Anopheles melas AMEC019196 N 0.000
AMEM017076 Anopheles merus AMEM017076 N 0.000
AMIN002112 Anopheles minimus AMIN002112 N 0.000
AQUA005702 Anopheles quadriannulatus AQUA005702 N 0.000
ASIS018453 Anopheles sinensis ASIS018453 N 0.000
ASTEI06186 Anopheles stephensi ASTEI06186 N 0.000
CpipJ_CPIJ018108 Culex pipiens CpipJ_CPIJ018108 N 0.000
CpipJ_CPIJ020297 Culex pipiens CpipJ_CPIJ020297 N 0.000
CPIJ018108 Culex quinquefasciatus CPIJ018108 N 0.000
CPIJ020297 Culex quinquefasciatus CPIJ020297 N 0.000
GF18450 Drosophila ananassae FBgn0095468 N 0.000
GG11136 Drosophila erecta FBgn0103438 N 0.000
GH22220 Drosophila grimshawi FBgn0129681 N 0.000
CG34376 Drosophila melanogaster FBgn0085405 N 0.000
GI21975 Drosophila mojavensis FBgn0144704 N 0.000
GL24217 Drosophila persimilis FBgn0161807 N 0.000
GA12566 Drosophila pseudoobscura FBgn0072612 N 0.000
GM26434 Drosophila sechellia FBgn0181287 N 0.000
GD20951 Drosophila simulans FBgn0192408 N 0.000
GJ14335 Drosophila virilis FBgn0201548 N 0.000
GK11694 Drosophila willistoni FBgn0213705 N 0.000
GE10301 Drosophila yakuba FBgn0228173 N 0.000
MDOA004998 Musca domestica MDOA004998 N 0.000