CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_002_01252
(
Aquilegia coerulea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Aquca_002_01252
T142524_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.811
0.976
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.811
0.976
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_002_01252.1
C2H2 ZF
133
154
WVCEKCSKGYAVQSDYKAHLKT
Aquca_002_01252.1
C2H2 ZF
154
179
TCGTRGHSCDCGRVFSRVESFIEHQD
Links
Other
C2H2 ZF
family TFs
Other
Aquilegia coerulea
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy