CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.18473s0395
(
Boechera stricta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Bostr.18473s0395
T142587_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.763
0.930
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.763
0.930
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.759
0.884
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.18473s0395.1.p
C2H2 ZF
145
166
WKCDKCSKKYAVMSDWKAHSKI
Bostr.18473s0395.1.p
C2H2 ZF
165
191
KICGTREYRCDCGTLFSRKDSFITHRA
Links
Other
C2H2 ZF
family TFs
Other
Boechera stricta
TFs
281 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy