Bostr.2128s0015 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.2128s0015 T142593_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.827 1.000
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.820 0.891
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.820 0.891
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.820 0.891
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.798 0.870
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.848
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.848
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.775 0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2128s0015.1.p C2H2 ZF 89 111
Bostr.2128s0015.1.p C2H2 ZF 154 176

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSONIG00000018891 Oreochromis niloticus ENSONIG00000018891 I 0.000
ENSLOCG00000018299 Lepisosteus oculatus ENSLOCG00000018299 I 0.000
ENSGMOG00000008894 Gadus morhua ENSGMOG00000008894 I 0.000
ENSTNIG00000008333 Tetraodon nigroviridis ENSTNIG00000008333 I 0.000
ENSGACG00000006400 Gasterosteus aculeatus ENSGACG00000006400 I 0.000
ENSAMXG00000025528 Astyanax mexicanus ENSAMXG00000025528 I 0.000
ENSORLG00000016478 Oryzias latipes ENSORLG00000016478 I 0.000
ENSXMAG00000005127 Xiphophorus maculatus ENSXMAG00000005127 N 0.000
nfil3-5 Takifugu rubripes ENSTRUG00000009543 N 0.000
ENSXMAG00000019530 Xiphophorus maculatus ENSXMAG00000019530 N 0.000
Ogr13014 Ophisaurus gracilis Ogr13014 N 0.000
nfil3-5 Tetraodon nigroviridis ENSTNIG00000002293 N 0.000
ENSPFOG00000020687 Poecilia formosa ENSPFOG00000020687 N 0.000
ENSPFOG00000020649 Poecilia formosa ENSPFOG00000020649 N 0.000
nfil3-5 Oryzias latipes ENSORLG00000014730 N 0.000
ENSAMXG00000025840 Astyanax mexicanus ENSAMXG00000025840 N 0.000
nfil3-2 Danio rerio ENSDARG00000043237 N 0.000
nfil3-5 Danio rerio ENSDARG00000094965 N 0.000
ENSGACG00000019140 Gasterosteus aculeatus ENSGACG00000019140 N 0.000
ENSGMOG00000004386 Gadus morhua ENSGMOG00000004386 N 0.000
ENSLACG00000009977 Latimeria chalumnae ENSLACG00000009977 N 0.000
ENSONIG00000008057 Oreochromis niloticus ENSONIG00000008057 N 0.000
ENSACAG00000029030 Anolis carolinensis ENSACAG00000029030 N 0.000
Pvit_11642 Pogona vitticeps Pvit_11642 N 0.000