Bostr.2983s0191 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.2983s0191 T142615_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.794 0.927
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.774 0.927
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.774 0.927
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.767 0.780
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.767 0.780
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.764 0.902
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.764 0.854
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.764 0.854
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.764 0.854
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.759 0.878
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.759 0.878
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.759 0.829
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.759 0.829
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2983s0191.1.p C2H2 ZF 160 181
Bostr.2983s0191.1.p C2H2 ZF 182 206

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

613 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
lola Drosophila melanogaster FBgn0005630 D 0.000
GA30442 Drosophila pseudoobscura FBgn0264579 I 0.000
pre-lola-G Drosophila melanogaster FBgn0264817 N 0.000
MESCA000196 Megaselia scalaris MESCA000196 N 0.000
LCUP002998 Lucilia cuprina LCUP002998 N 0.000
AATE000865 Anopheles atroparvus AATE000865 N 0.000
ACOM037725 Anopheles coluzzii ACOM037725 N 0.000
ACUA025367 Anopheles culicifacies ACUA025367 N 0.000
ADIR004656 Anopheles dirus ADIR004656 N 0.000
AFAF017839 Anopheles farauti AFAF017839 N 0.000
AMAM016688 Anopheles maculatus AMAM016688 N 0.000
AMEM010841 Anopheles merus AMEM010841 N 0.000
ASTEI05995 Anopheles stephensi ASTEI05995 N 0.000
LLOJ008817 Lutzomyia longipalpis LLOJ008817 N 0.000
CpipJ_CPIJ015576 Culex pipiens CpipJ_CPIJ015576 N 0.000
GE13100 Drosophila yakuba FBgn0230802 N 0.000
AGAP005245 Anopheles gambiae AGAP005245 N 0.000
CPIJ015576 Culex quinquefasciatus CPIJ015576 N 0.000
GF11104 Drosophila ananassae FBgn0088144 N 0.000
GH20621 Drosophila grimshawi FBgn0128084 N 0.000
GH20629 Drosophila grimshawi FBgn0128092 N 0.000
GI20190 Drosophila mojavensis FBgn0142926 N 0.000
GL17198 Drosophila persimilis FBgn0154801 N 0.000
GM20517 Drosophila sechellia FBgn0175399 N 0.000
GD25970 Drosophila simulans FBgn0197247 N 0.000
GD25977 Drosophila simulans FBgn0197254 N 0.000
GJ20132 Drosophila virilis FBgn0207272 N 0.000
GK19013 Drosophila willistoni FBgn0221011 N 0.000
PPAI004092 Phlebotomus papatasi PPAI004092 N 0.000