Cagra.2350s0072 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.2350s0072 T142656_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.768 0.696
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.768 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2350s0072.1.p C2H2 ZF 163 185
Cagra.2350s0072.1.p C2H2 ZF 221 243

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I 0.821
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I 0.821
ZAT3 Arabidopsis thaliana AT4G35280 I 0.821
Bra017706 Brassica rapa Bra017706 I 0.821
Bo7g117320 Brassica oleracea Bo7g117320 I 0.815
Thhalv10025912m.g Eutrema salsugineum Thhalv10025912m.g I 0.811
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.786
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I 0.777
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.775
Bra011601 Brassica rapa Bra011601 N 0.772
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.769
ZAT11 Arabidopsis thaliana AT2G37430 I 0.769
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.769
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.769
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.769
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.769
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.768
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.768
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.768
MDP0000237150 Malus domestica MDP0000237150 I 0.768
Bo00576s170 Brassica oleracea Bo00576s170 I 0.768
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.768
Bra003148 Brassica rapa Bra003148 I 0.768
Bra039806 Brassica rapa Bra039806 I 0.768
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.768
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.762
Bo1g006590 Brassica oleracea Bo1g006590 N 0.762
Bo6g067580 Brassica oleracea Bo6g067580 I 0.762
Bra030981 Brassica rapa Bra030981 I 0.762
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.761
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.761
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.761
Sb01g031920 Sorghum bicolor Sb01g031920 N 0.761
Si037516m.g Setaria italica Si037516m.g N 0.761
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.761
OB03G31790 Oryza brachyantha OB03G31790 N 0.761
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.761
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.761
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.761
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.761
F775_12743 Aegilops tauschii F775_12743 N 0.761
OBART03G22560 Oryza barthii OBART03G22560 N 0.761
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.761
OS03G0437100 Oryza sativa OS03G0437100 N 0.761
OS11G0340477 Oryza sativa OS11G0340477 N 0.761
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.761
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.761
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.761
BGIOSGA033523 Oryza indica BGIOSGA033523 N 0.758
OB11G27850 Oryza brachyantha OB11G27850 N 0.758
BGIOSGA033525 Oryza indica BGIOSGA033525 N 0.758
OS11G0702300 Oryza sativa OS11G0702300 N 0.758
ORUFI04G17060 Oryza rufipogon ORUFI04G17060 N 0.757