Cagra.2350s0104 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.2350s0104 T142657_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT4G35610
M00859_2.00
Arabidopsis thaliana
NNBHAGCTDNN

NNHAGCTDVNN
PBM
Franco-Zorrilla et al.(2014)
At4g35610
0.827 0.909
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2350s0104.1.p C2H2 ZF 175 196

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10007498m.g Capsella rubella Carubv10007498m.g I 0.827
AT4G35610 Arabidopsis thaliana AT4G35610 D 0.827
scaffold_700556.1 Arabidopsis lyrata scaffold_700556.1 I 0.827
Thhalv10026068m.g Eutrema salsugineum Thhalv10026068m.g I 0.769
SapurV1A.0085s0140 Salix purpurea SapurV1A.0085s0140 I 0.757
POPTR_0005s10330 Populus trichocarpa POPTR_0005s10330 I 0.757
POPTR_0007s08920 Populus trichocarpa POPTR_0007s08920 I 0.757